Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KHS93_RS01945 Genome accession   NZ_CP075547
Coordinates   382801..383754 (+) Length   317 a.a.
NCBI ID   WP_046559346.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SN16-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377801..388754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHS93_RS01920 (KHS93_01920) - 377845..379278 (+) 1434 WP_161503399.1 HAMP domain-containing sensor histidine kinase -
  KHS93_RS01925 (KHS93_01925) rapC 379431..380579 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  KHS93_RS01930 (KHS93_01930) phrC 380563..380682 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  KHS93_RS01935 (KHS93_01935) - 380832..380927 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  KHS93_RS01940 (KHS93_01940) - 381022..382386 (-) 1365 WP_014304341.1 aspartate kinase -
  KHS93_RS01945 (KHS93_01945) ceuB 382801..383754 (+) 954 WP_046559346.1 ABC transporter permease Machinery gene
  KHS93_RS01950 (KHS93_01950) - 383744..384691 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  KHS93_RS01955 (KHS93_01955) - 384685..385443 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  KHS93_RS01960 (KHS93_01960) - 385465..386409 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  KHS93_RS01965 (KHS93_01965) - 386451..387872 (-) 1422 WP_014304342.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=569430 KHS93_RS01945 WP_046559346.1 382801..383754(+) (ceuB) [Bacillus amyloliquefaciens strain SN16-1]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMIFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=569430 KHS93_RS01945 WP_046559346.1 382801..383754(+) (ceuB) [Bacillus amyloliquefaciens strain SN16-1]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGATTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533