Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   IXZ18_RS06680 Genome accession   NZ_CP075542
Coordinates   1223133..1223507 (-) Length   124 a.a.
NCBI ID   WP_002849740.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. venerealis bv. intermedius strain CFV924     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1218133..1228507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IXZ18_RS06655 (IXZ18_06535) tatB 1218796..1219251 (+) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -
  IXZ18_RS06660 (IXZ18_06540) tatC 1219251..1220006 (+) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  IXZ18_RS06665 (IXZ18_06545) queA 1220003..1221022 (+) 1020 WP_035170809.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  IXZ18_RS06670 (IXZ18_06550) - 1221032..1222276 (+) 1245 WP_011732089.1 hypothetical protein -
  IXZ18_RS06675 (IXZ18_06555) - 1222262..1223125 (-) 864 WP_002849738.1 SAM-dependent methyltransferase -
  IXZ18_RS06680 (IXZ18_06560) dprB 1223133..1223507 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  IXZ18_RS06685 (IXZ18_06565) dprA 1223504..1224271 (-) 768 WP_002849743.1 DNA-processing protein DprA Machinery gene
  IXZ18_RS06690 (IXZ18_06570) - 1224255..1225340 (-) 1086 WP_134864086.1 divergent polysaccharide deacetylase family protein -
  IXZ18_RS06695 (IXZ18_06575) ilvC 1225419..1226441 (-) 1023 WP_002849745.1 ketol-acid reductoisomerase -
  IXZ18_RS06700 (IXZ18_06580) - 1226588..1227400 (+) 813 WP_002849747.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13694.09 Da        Isoelectric Point: 8.4803

>NTDB_id=569385 IXZ18_RS06680 WP_002849740.1 1223133..1223507(-) (dprB) [Campylobacter fetus subsp. venerealis bv. intermedius strain CFV924]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DSEIIYVDEAYSSCEASELSKDSKDGRFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=569385 IXZ18_RS06680 WP_002849740.1 1223133..1223507(-) (dprB) [Campylobacter fetus subsp. venerealis bv. intermedius strain CFV924]
TTGATAGTAGCTATCGATGTCGGACTAAAAAGAATAGGAGTTGCGGTTGCGGTTTTACCGACTGTTGTACTTCCTAGCGA
ACCTATTTTACGTAAAAATCGCAATCAGGCGGCGAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCGACAAAACTAG
TAGTCGGCTTGCCAAAAGGCGGCAGCTGCGAGGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTAGTCGGTTTT
GATTCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGCGAACTGTCAAAAGATTCTAAAGACGGTAG
ATTTGATAGCATTGCCGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.388

100

0.524