Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   MMZ76_RS09505 Genome accession   NZ_CP093015
Coordinates   2030248..2030577 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H16     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2025248..2035577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ76_RS09490 (MMZ76_09495) - 2025284..2026303 (+) 1020 WP_003113413.1 glycosyltransferase family 4 protein -
  MMZ76_RS09495 (MMZ76_09500) - 2026381..2027495 (+) 1115 Protein_1889 IS3 family transposase -
  MMZ76_RS09500 (MMZ76_09505) - 2028060..2030057 (+) 1998 WP_094954319.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  MMZ76_RS09505 (MMZ76_09510) comEA/comE1 2030248..2030577 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  MMZ76_RS09515 (MMZ76_09520) - 2030794..2031990 (-) 1197 WP_003091428.1 amino acid aminotransferase -
  MMZ76_RS09520 (MMZ76_09525) uvrB 2032178..2034190 (+) 2013 WP_003110848.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=569348 MMZ76_RS09505 WP_003091430.1 2030248..2030577(+) (comEA/comE1) [Pseudomonas aeruginosa strain H16]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=569348 MMZ76_RS09505 WP_003091430.1 2030248..2030577(+) (comEA/comE1) [Pseudomonas aeruginosa strain H16]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385