Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MMZ76_RS02015 Genome accession   NZ_CP093015
Coordinates   439592..440941 (+) Length   449 a.a.
NCBI ID   WP_023095111.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain H16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 434592..445941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMZ76_RS01995 (MMZ76_01995) - 435429..435995 (-) 567 WP_003084491.1 hypothetical protein -
  MMZ76_RS02000 (MMZ76_02000) rsmD 435998..436594 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MMZ76_RS02005 (MMZ76_02005) - 436594..438081 (-) 1488 WP_023092305.1 pitrilysin family protein -
  MMZ76_RS02010 (MMZ76_02010) - 438074..439471 (-) 1398 WP_003084498.1 pitrilysin family protein -
  MMZ76_RS02015 (MMZ76_02015) pilA 439592..440941 (+) 1350 WP_023095111.1 signal recognition particle-docking protein FtsY Machinery gene
  MMZ76_RS02020 (MMZ76_02020) ftsE 440938..441609 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  MMZ76_RS02025 (MMZ76_02025) ftsX 441609..442616 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  MMZ76_RS02030 (MMZ76_02030) rpoH 442730..443584 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  MMZ76_RS02035 (MMZ76_02035) - 443649..444254 (+) 606 WP_003084511.1 hypothetical protein -
  MMZ76_RS02040 (MMZ76_02040) mtgA 444259..444990 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  MMZ76_RS02045 (MMZ76_02045) - 445027..445404 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  MMZ76_RS02050 (MMZ76_02050) thiS 445507..445707 (+) 201 WP_094954093.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 47713.12 Da        Isoelectric Point: 4.6083

>NTDB_id=569329 MMZ76_RS02015 WP_023095111.1 439592..440941(+) (pilA) [Pseudomonas aeruginosa strain H16]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGE
GMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVA
REPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQA
AKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDG
TAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=569329 MMZ76_RS02015 WP_023095111.1 439592..440941(+) (pilA) [Pseudomonas aeruginosa strain H16]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCCGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCGTCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTCCGGCAG
TCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGGCTGTCCAAGACCAGCGCCAGCATCGGCGAA
GGCATGGCCAGCCTGTTCCTCGGTCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCTGACCGC
CGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTAGCGCGCAAGGAGCTGGCCGACAGCG
GCGCGCTGTACAAGGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGACGTCGCG
CGCGAGCCCTATGTGATCCTGGTGGTTGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAAGAAGCT
GCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGGTCTGGG
GCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTGCAGGCC
GCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGAGGAGCT
GAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCGGCACCG
GGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTGGACGGC
ACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGAGGGGAT
CGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(244-443)

SRP54-type protein, helical bundle domain (SRP54_N)

(159-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.796

95.991

0.459