Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IGI28_RS14545 Genome accession   NZ_CP075484
Coordinates   2915486..2916115 (-) Length   209 a.a.
NCBI ID   WP_032161475.1    Uniprot ID   -
Organism   Escherichia coli strain NT1N25     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2910486..2921115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI28_RS14530 helD 2910728..2912782 (-) 2055 WP_166488234.1 DNA helicase IV -
  IGI28_RS14535 yccF 2912905..2913351 (+) 447 WP_032161476.1 YccF domain-containing protein -
  IGI28_RS14540 yccS 2913361..2915523 (+) 2163 WP_166488220.1 YccS family putative transporter -
  IGI28_RS14545 sxy/tfoX 2915486..2916115 (-) 630 WP_032161475.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IGI28_RS14550 sulA 2916333..2916842 (+) 510 WP_032161474.1 SOS-induced cell division inhibitor SulA -
  IGI28_RS14555 ompA 2917199..2918254 (+) 1056 WP_166488219.1 porin OmpA -
  IGI28_RS14560 matP 2918328..2918780 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IGI28_RS14565 ycbZ 2918966..2920726 (+) 1761 WP_193114882.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24183.99 Da        Isoelectric Point: 8.4291

>NTDB_id=569265 IGI28_RS14545 WP_032161475.1 2915486..2916115(-) (sxy/tfoX) [Escherichia coli strain NT1N25]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVLLSKYSLDAALKEKSTRDTQQRLKDLPNMSYHLEAILGEVGIKDVRALRILGAKMCWLRLRQHN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSITPKQEFPEELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=569265 IGI28_RS14545 WP_032161475.1 2915486..2916115(-) (sxy/tfoX) [Escherichia coli strain NT1N25]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTGGCGACGTTAGGCACTATTGAATATCGATCGTT
GTTTGGCAGTTACAGTCTGACCGTTGACGACACAGTATTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGAGCTTGTG
AGCAAAGCGCACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGTGGCCGCCCCGTTACTCTCAAT
TACTACCGGGTTGATGAAAGCCTATGGCGGAATCAACAGAAGTTGGTTCTGCTGTCGAAATATTCACTGGACGCTGCGCT
TAAAGAGAAAAGCACGCGCGATACCCAACAACGGCTGAAAGATTTGCCCAATATGTCTTATCACCTGGAAGCGATTCTCG
GGGAAGTGGGGATTAAGGATGTTCGGGCGCTACGTATACTTGGGGCGAAAATGTGCTGGTTGAGACTACGGCAGCATAAC
AGTCTGGTGACAGAAAAGATTCTGTTCATGCTTGAAGGGGCAATTATCGGTATCCATGAAGCAGCGCTCCCGGTGGCGCG
CCGCCAGGAGCTTGCAGAATGGGCTGATTCTATTACACCGAAACAGGAGTTTCCTGAGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

95.215

100

0.952