Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IGI33_RS14135 Genome accession   NZ_CP075477
Coordinates   2918123..2918752 (-) Length   209 a.a.
NCBI ID   WP_032161475.1    Uniprot ID   -
Organism   Escherichia coli strain NT1W25     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2913123..2923752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI33_RS14120 helD 2913365..2915419 (-) 2055 WP_166488234.1 DNA helicase IV -
  IGI33_RS14125 yccF 2915542..2915988 (+) 447 WP_032161476.1 YccF domain-containing protein -
  IGI33_RS14130 yccS 2915998..2918160 (+) 2163 WP_166488220.1 YccS family putative transporter -
  IGI33_RS14135 sxy/tfoX 2918123..2918752 (-) 630 WP_032161475.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IGI33_RS14140 sulA 2918970..2919479 (+) 510 WP_032161474.1 SOS-induced cell division inhibitor SulA -
  IGI33_RS14145 ompA 2919836..2920891 (+) 1056 WP_166488219.1 porin OmpA -
  IGI33_RS14150 matP 2920965..2921417 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IGI33_RS14155 ycbZ 2921603..2923363 (+) 1761 WP_193114882.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24183.99 Da        Isoelectric Point: 8.4291

>NTDB_id=569221 IGI33_RS14135 WP_032161475.1 2918123..2918752(-) (sxy/tfoX) [Escherichia coli strain NT1W25]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRPVTLN
YYRVDESLWRNQQKLVLLSKYSLDAALKEKSTRDTQQRLKDLPNMSYHLEAILGEVGIKDVRALRILGAKMCWLRLRQHN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSITPKQEFPEELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=569221 IGI33_RS14135 WP_032161475.1 2918123..2918752(-) (sxy/tfoX) [Escherichia coli strain NT1W25]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAGTCACAAGAATACCTGGCGACGTTAGGCACTATTGAATATCGATCGTT
GTTTGGCAGTTACAGTCTGACCGTTGACGACACAGTATTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGAGCTTGTG
AGCAAAGCGCACAGTACTGTGTAAAACATCCGCCAGTCTGGCTGACATATAAAAAGTGTGGCCGCCCCGTTACTCTCAAT
TACTACCGGGTTGATGAAAGCCTATGGCGGAATCAACAGAAGTTGGTTCTGCTGTCGAAATATTCACTGGACGCTGCGCT
TAAAGAGAAAAGCACGCGCGATACCCAACAACGGCTGAAAGATTTGCCCAATATGTCTTATCACCTGGAAGCGATTCTCG
GGGAAGTGGGGATTAAGGATGTTCGGGCGCTACGTATACTTGGGGCGAAAATGTGCTGGTTGAGACTACGGCAGCATAAC
AGTCTGGTGACAGAAAAGATTCTGTTCATGCTTGAAGGGGCAATTATCGGTATCCATGAAGCAGCGCTCCCGGTGGCGCG
CCGCCAGGAGCTTGCAGAATGGGCTGATTCTATTACACCGAAACAGGAGTTTCCTGAGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

95.215

100

0.952