Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IGI29_RS14420 Genome accession   NZ_CP075474
Coordinates   2833291..2833920 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NT1N28     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2828291..2838920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI29_RS14405 helD 2828533..2830587 (-) 2055 WP_185229460.1 DNA helicase IV -
  IGI29_RS14410 yccF 2830710..2831156 (+) 447 WP_001261235.1 YccF domain-containing protein -
  IGI29_RS14415 yccS 2831166..2833328 (+) 2163 WP_000875061.1 YccS family putative transporter -
  IGI29_RS14420 sxy/tfoX 2833291..2833920 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IGI29_RS14425 sulA 2834139..2834648 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IGI29_RS14430 ompA 2835005..2836045 (+) 1041 WP_000750416.1 porin OmpA -
  IGI29_RS14435 matP 2836121..2836573 (-) 453 WP_193115110.1 macrodomain Ter protein MatP -
  IGI29_RS14440 ycbZ 2836759..2838519 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=569199 IGI29_RS14420 WP_000839153.1 2833291..2833920(-) (sxy/tfoX) [Escherichia coli strain NT1N28]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=569199 IGI29_RS14420 WP_000839153.1 2833291..2833920(-) (sxy/tfoX) [Escherichia coli strain NT1N28]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1