Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IGI32_RS14280 Genome accession   NZ_CP075469
Coordinates   2921332..2921961 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NT1W22     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2916332..2926961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI32_RS14265 helD 2916574..2918628 (-) 2055 WP_001295354.1 DNA helicase IV -
  IGI32_RS14270 yccF 2918751..2919197 (+) 447 WP_001261235.1 YccF domain-containing protein -
  IGI32_RS14275 yccS 2919207..2921369 (+) 2163 WP_000875061.1 YccS family putative transporter -
  IGI32_RS14280 sxy/tfoX 2921332..2921961 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IGI32_RS14285 sulA 2922180..2922689 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IGI32_RS14290 ompA 2923046..2924086 (+) 1041 WP_000750416.1 porin OmpA -
  IGI32_RS14295 matP 2924162..2924614 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IGI32_RS14300 ycbZ 2924800..2926560 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=569156 IGI32_RS14280 WP_000839153.1 2921332..2921961(-) (sxy/tfoX) [Escherichia coli strain NT1W22]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=569156 IGI32_RS14280 WP_000839153.1 2921332..2921961(-) (sxy/tfoX) [Escherichia coli strain NT1W22]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1