Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   MM141_RS09425 Genome accession   NZ_CP093012
Coordinates   1993880..1994209 (+) Length   109 a.a.
NCBI ID   WP_003138486.1    Uniprot ID   A0A0H2ZDM5
Organism   Pseudomonas aeruginosa strain H20     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1988880..1999209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM141_RS09410 (MM141_09415) - 1989580..1990539 (+) 960 WP_004350973.1 SDR family oxidoreductase -
  MM141_RS09415 (MM141_09420) - 1990536..1991561 (+) 1026 WP_009313766.1 glycosyltransferase family 4 protein -
  MM141_RS09420 (MM141_09425) - 1991692..1993689 (+) 1998 WP_009313767.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  MM141_RS09425 (MM141_09430) comEA/comE1 1993880..1994209 (+) 330 WP_003138486.1 ComEA family DNA-binding protein Machinery gene
  MM141_RS09435 (MM141_09440) - 1994426..1995622 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  MM141_RS09440 (MM141_09445) uvrB 1995810..1997822 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11383.31 Da        Isoelectric Point: 8.0459

>NTDB_id=569148 MM141_RS09425 WP_003138486.1 1993880..1994209(+) (comEA/comE1) [Pseudomonas aeruginosa strain H20]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=569148 MM141_RS09425 WP_003138486.1 1993880..1994209(+) (comEA/comE1) [Pseudomonas aeruginosa strain H20]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385