Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IGI31_RS13915 Genome accession   NZ_CP075465
Coordinates   2869009..2869638 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NT1N34     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2864009..2874638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI31_RS13900 helD 2864251..2866305 (-) 2055 WP_000420536.1 DNA helicase IV -
  IGI31_RS13905 yccF 2866428..2866874 (+) 447 WP_001261235.1 YccF domain-containing protein -
  IGI31_RS13910 yccS 2866884..2869046 (+) 2163 WP_000875061.1 YccS family putative transporter -
  IGI31_RS13915 sxy/tfoX 2869009..2869638 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IGI31_RS13920 sulA 2869857..2870366 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IGI31_RS13925 ompA 2870723..2871763 (+) 1041 WP_000750416.1 porin OmpA -
  IGI31_RS13930 matP 2871839..2872291 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IGI31_RS13935 ycbZ 2872477..2874237 (+) 1761 WP_053295250.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=569133 IGI31_RS13915 WP_000839153.1 2869009..2869638(-) (sxy/tfoX) [Escherichia coli strain NT1N34]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=569133 IGI31_RS13915 WP_000839153.1 2869009..2869638(-) (sxy/tfoX) [Escherichia coli strain NT1N34]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1