Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IGI19_RS14845 Genome accession   NZ_CP075462
Coordinates   2933985..2934614 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain NT1F10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2928985..2939614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGI19_RS14830 helD 2929227..2931281 (-) 2055 WP_001295354.1 DNA helicase IV -
  IGI19_RS14835 yccF 2931404..2931850 (+) 447 WP_001261235.1 YccF domain-containing protein -
  IGI19_RS14840 yccS 2931860..2934022 (+) 2163 WP_000875061.1 YccS family putative transporter -
  IGI19_RS14845 sxy/tfoX 2933985..2934614 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  IGI19_RS14850 sulA 2934833..2935342 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  IGI19_RS14855 ompA 2935699..2936739 (+) 1041 WP_000750416.1 porin OmpA -
  IGI19_RS14860 matP 2936815..2937267 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  IGI19_RS14865 ycbZ 2937453..2939213 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=569112 IGI19_RS14845 WP_000839153.1 2933985..2934614(-) (sxy/tfoX) [Escherichia coli strain NT1F10]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=569112 IGI19_RS14845 WP_000839153.1 2933985..2934614(-) (sxy/tfoX) [Escherichia coli strain NT1F10]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1