Detailed information NTG0569107

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LJF86_RS20435
• Genome accession: NZ_CP093011
• Coordinates: 4269810..4270802 (-)
• Length: 330 a.a.
• NCBI ID: WP_000224470.1
• Uniprot ID: P0ACQ1
• Organism: Escherichia coli strain 131
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4264810..4275802

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LJF86_RS20400 (LJF86_20400)	yiaM	4264901..4265368 (-)	468	WP_000821446.1	2,3-diketo-L-gulonate TRAP transporter small permease YiaM	-
LJF86_RS20405 (LJF86_20405)	-	4265482..4266402 (-)	921	WP_000856275.1	DUF4862 family protein	-
LJF86_RS20410 (LJF86_20410)	yiaL	4266425..4266889 (-)	465	WP_000576089.1	YhcH/YjgK/YiaL family protein	-
LJF86_RS20415 (LJF86_20415)	-	4266901..4267026 (-)	126	Protein_4010	2,3-diketo-L-gulonate reductase	-
LJF86_RS20420 (LJF86_20420)	-	4267083..4267151 (+)	69	Protein_4011	IS1 family transposase	-
LJF86_RS20425 (LJF86_20425)	yieP	4267702..4268394 (+)	693	WP_001131164.1	FadR/GntR family transcriptional regulator	-
LJF86_RS20430 (LJF86_20430)	mdtD	4268417..4269844 (+)	1428	WP_001280867.1	multidrug transporter subunit MdtD	-
LJF86_RS20435 (LJF86_20435)	cytR	4269810..4270802 (-)	993	WP_000224470.1	ribose operon transcriptional repressor RbsR	Regulator
LJF86_RS20440 (LJF86_20440)	rbsK	4270806..4271735 (-)	930	WP_001545694.1	ribokinase	-
LJF86_RS20445 (LJF86_20445)	rbsB	4271861..4272751 (-)	891	WP_001056273.1	ribose ABC transporter substrate-binding protein RbsB	-
LJF86_RS20450 (LJF86_20450)	rbsC	4272776..4273741 (-)	966	WP_000211858.1	ribose ABC transporter permease	-
LJF86_RS20455 (LJF86_20455)	rbsA	4273746..4275251 (-)	1506	WP_000387770.1	ribose ABC transporter ATP-binding protein RbsA	-
LJF86_RS20460 (LJF86_20460)	rbsD	4275259..4275678 (-)	420	WP_001296586.1	D-ribose pyranase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 36611.90 Da
• Isoelectric Point: 5.2141

>NTDB_id=569107 LJF86_RS20435 WP_000224470.1 4269810..4270802(-) (cytR) [Escherichia coli strain 131]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide

• Length: 993 bp

>NTDB_id=569107 LJF86_RS20435 WP_000224470.1 4269810..4270802(-) (cytR) [Escherichia coli strain 131]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATACACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (169-329)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

3D structure

• AlphaFold DB: P0ACQ1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	37.048	100	0.373
cytR	Vibrio cholerae C6706	39.088	93.03	0.364