Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIB02_RS15080 Genome accession   NZ_CP075374
Coordinates   3078585..3079214 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain no107     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3073585..3084214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIB02_RS15065 (KIB02_15070) helD 3073827..3075881 (-) 2055 WP_000420536.1 DNA helicase IV -
  KIB02_RS15070 (KIB02_15075) yccF 3076004..3076450 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KIB02_RS15075 (KIB02_15080) yccS 3076460..3078622 (+) 2163 WP_000875019.1 YccS family putative transporter -
  KIB02_RS15080 (KIB02_15085) sxy/tfoX 3078585..3079214 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIB02_RS15085 (KIB02_15090) sulA 3079433..3079942 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIB02_RS15090 (KIB02_15095) ompA 3080299..3081351 (+) 1053 WP_000750419.1 porin OmpA -
  KIB02_RS15095 (KIB02_15100) matP 3081426..3081878 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  KIB02_RS15100 (KIB02_15105) ycbZ 3082064..3083824 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=569043 KIB02_RS15080 WP_000839153.1 3078585..3079214(-) (sxy/tfoX) [Escherichia coli strain no107]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=569043 KIB02_RS15080 WP_000839153.1 3078585..3079214(-) (sxy/tfoX) [Escherichia coli strain no107]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1