Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KIL00_RS00245 Genome accession   NZ_CP075344
Coordinates   44849..45139 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis subsp. subtilis strain A1 - Midalam     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39849..50139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL00_RS00205 (KIL00_00205) darA 39872..40201 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  KIL00_RS00210 (KIL00_00210) yaaR 40214..40654 (+) 441 WP_009966249.1 YaaR family protein -
  KIL00_RS00215 (KIL00_00215) holB 40666..41655 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  KIL00_RS00220 (KIL00_00220) ricT 41658..42485 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  KIL00_RS00225 (KIL00_00225) yabA 42500..42859 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  KIL00_RS00230 (KIL00_00230) trmNF 42918..43661 (+) 744 WP_041338388.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KIL00_RS00235 (KIL00_00235) yazA 43648..43947 (+) 300 WP_069837179.1 GIY-YIG nuclease family protein -
  KIL00_RS00240 (KIL00_00240) rsmI 43922..44800 (+) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KIL00_RS00245 (KIL00_00245) abrB 44849..45139 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  KIL00_RS00250 (KIL00_00250) metG 45634..47628 (+) 1995 WP_014478594.1 methionine--tRNA ligase -
  KIL00_RS00255 (KIL00_00255) dayD 47708..48475 (+) 768 WP_014478595.1 TatD family hydrolase -
  KIL00_RS00260 (KIL00_00260) yabE 48631..49944 (+) 1314 WP_029726392.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=568879 KIL00_RS00245 WP_003226760.1 44849..45139(-) (abrB) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=568879 KIL00_RS00245 WP_003226760.1 44849..45139(-) (abrB) [Bacillus subtilis subsp. subtilis strain A1 - Midalam]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1