Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MLE07_RS10535 Genome accession   NZ_CP092892
Coordinates   2094867..2095832 (+) Length   321 a.a.
NCBI ID   WP_111782129.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain LN-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2089867..2100832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLE07_RS10510 (MLE07_10510) - 2090015..2090959 (+) 945 WP_004429910.1 tripartite tricarboxylate transporter substrate binding protein -
  MLE07_RS10515 (MLE07_10515) - 2090956..2091450 (+) 495 WP_107675954.1 tripartite tricarboxylate transporter TctB family protein -
  MLE07_RS10520 (MLE07_10520) - 2091545..2093062 (+) 1518 WP_080866416.1 tripartite tricarboxylate transporter permease -
  MLE07_RS10525 (MLE07_10525) - 2093191..2093451 (+) 261 WP_004429904.1 hypothetical protein -
  MLE07_RS10530 (MLE07_10530) - 2093779..2094717 (+) 939 WP_099085886.1 siderophore ABC transporter substrate-binding protein -
  MLE07_RS10535 (MLE07_10535) ceuB 2094867..2095832 (+) 966 WP_111782129.1 ABC transporter permease Machinery gene
  MLE07_RS10540 (MLE07_10540) - 2095825..2096793 (+) 969 WP_243015798.1 iron chelate uptake ABC transporter family permease subunit -
  MLE07_RS10545 (MLE07_10545) - 2096790..2097548 (+) 759 WP_112953198.1 ABC transporter ATP-binding protein -
  MLE07_RS10550 (MLE07_10550) dps 2097671..2098159 (+) 489 WP_020011667.1 DNA starvation/stationary phase protection protein Dps -
  MLE07_RS10555 (MLE07_10555) - 2098230..2098451 (-) 222 WP_004429892.1 hypothetical protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 34236.23 Da        Isoelectric Point: 11.0429

>NTDB_id=568838 MLE07_RS10535 WP_111782129.1 2094867..2095832(+) (ceuB) [Agrobacterium tumefaciens strain LN-1]
MKSLSLILALLLALTLAIGSLFVGVSNVSLATLFAPDTSTDALRVLLVSRIPRTLALILAGSSMAIAGLIMQMLVRNRFV
EPSTAGTTESAGLGLLTVTLIAPDTPIFGKMLVAAVFALAGTALFLRILRQVPLRDVLLVPLIGIMLGGVISAVTTFFAY
RFDLLQSLGAWMTGDFSGVLRGRYELLWVGFLFAIAAYLAADRFTVAGMGRDFTTNLGLNYRRVMALGLTIVSLVSAVVV
VTVGMIPFLGLIVPNVVSLMIGDNMRRSVPWVATLGAVFVLSCDIIGRTVRAPYEIPIGTVVGVIGSVLFLYLLLRKRHH
A

Nucleotide


Download         Length: 966 bp        

>NTDB_id=568838 MLE07_RS10535 WP_111782129.1 2094867..2095832(+) (ceuB) [Agrobacterium tumefaciens strain LN-1]
GTGAAATCCCTGTCTCTCATCCTTGCCCTTCTTCTGGCGCTGACACTCGCAATCGGCAGCCTGTTCGTCGGTGTGAGCAA
CGTTTCTCTGGCCACGCTTTTTGCACCTGACACAAGCACGGATGCACTGCGCGTGCTGCTCGTCAGCCGCATTCCGCGCA
CGCTGGCGCTGATACTGGCCGGAAGCTCGATGGCGATTGCCGGTCTCATCATGCAGATGCTGGTGCGCAACCGTTTCGTG
GAACCTTCGACAGCGGGCACCACCGAATCCGCTGGTCTCGGCCTGCTCACCGTCACCCTGATTGCACCCGACACGCCGAT
CTTCGGCAAGATGCTGGTGGCCGCCGTTTTCGCGCTCGCCGGCACCGCGCTGTTCCTGCGTATCCTGAGACAAGTGCCAT
TGCGGGACGTGCTGCTGGTGCCGCTGATCGGCATCATGCTGGGCGGCGTCATCTCCGCCGTCACCACCTTCTTCGCCTAT
CGTTTCGATCTCTTGCAATCGCTCGGCGCATGGATGACGGGGGATTTTTCCGGCGTGCTGCGCGGCCGCTATGAATTGCT
CTGGGTCGGTTTCCTCTTCGCCATTGCCGCCTATCTCGCCGCGGACCGGTTTACGGTGGCTGGCATGGGGCGCGACTTCA
CCACCAATCTCGGCCTCAACTATCGCCGGGTGATGGCGCTCGGCCTCACCATCGTCTCGCTGGTCAGCGCCGTTGTCGTC
GTCACCGTCGGCATGATCCCCTTTCTCGGGCTGATCGTGCCGAACGTCGTCAGCCTGATGATCGGCGACAATATGCGCCG
CTCGGTTCCATGGGTGGCGACGCTTGGCGCAGTCTTCGTTCTCTCCTGCGACATCATCGGCCGAACCGTGCGCGCGCCTT
ATGAAATACCGATCGGAACCGTGGTCGGCGTCATCGGCAGCGTGCTGTTCCTTTATCTCCTGCTGCGGAAACGCCACCAT
GCGTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

43.987

98.442

0.433