Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   MLE07_RS00825 Genome accession   NZ_CP092892
Coordinates   167109..167474 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain LN-1     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 162109..172474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLE07_RS00810 (MLE07_00810) - 164323..164700 (-) 378 WP_111781317.1 hypothetical protein -
  MLE07_RS00815 (MLE07_00815) - 165218..166813 (+) 1596 WP_279238250.1 globin-coupled sensor protein -
  MLE07_RS00820 (MLE07_00820) - 166813..167112 (+) 300 WP_003503483.1 STAS domain-containing protein -
  MLE07_RS00825 (MLE07_00825) scnR 167109..167474 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  MLE07_RS00830 (MLE07_00830) - 167491..169752 (+) 2262 WP_107675072.1 chemotaxis protein CheA -
  MLE07_RS00835 (MLE07_00835) cheR 169766..170674 (+) 909 WP_112590899.1 protein-glutamate O-methyltransferase CheR -
  MLE07_RS00840 (MLE07_00840) cheB 170671..171726 (+) 1056 WP_243016221.1 protein-glutamate O-methylesterase CheB -
  MLE07_RS00845 (MLE07_00845) cheY2 171726..172115 (+) 390 WP_003503467.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=568816 MLE07_RS00825 WP_003493773.1 167109..167474(+) (scnR) [Agrobacterium tumefaciens strain LN-1]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=568816 MLE07_RS00825 WP_003493773.1 167109..167474(+) (scnR) [Agrobacterium tumefaciens strain LN-1]
GTGAAGAAAAAAGTTCTTACCGTGGATGATTCCCGGACGATCAGGAACATGCTCCTGGTCACGCTTAACAATGCCGGTTT
CGAAACCATTCAGGCCGAAGACGGCATCGAGGGCCTCGAAGTGCTCGAGCAGAGCAACCCCGATGTCATCGTGACTGATA
TCAACATGCCCCGTCTCGATGGTTTCGGCTTCATCGAGGGTGTGCGTCGCAACGAAAAGTACCGGGCGATCCCGATCCTC
GTTCTGACGACCGAAAGCGATGCAGAAAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACCGGCTGGATCGTCAAGCCGTT
CGACCCTGCAAAACTCATCGATGCCATTGAACGCGTAACCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364