Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   KIP84_RS17250 Genome accession   NZ_CP075323
Coordinates   3596409..3596735 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter sp. BHS4     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3591409..3601735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS17230 (KIP84_17235) - 3591516..3592142 (-) 627 WP_204086950.1 FHA domain-containing protein -
  KIP84_RS17235 (KIP84_17240) gspD 3592183..3594453 (-) 2271 WP_068557577.1 type II secretion system secretin GspD -
  KIP84_RS17240 (KIP84_17245) - 3594495..3595331 (-) 837 WP_213688974.1 type II secretion system protein N -
  KIP84_RS17245 (KIP84_17250) gspN 3595331..3596074 (-) 744 WP_032005861.1 type II secretion system protein N -
  KIP84_RS17250 (KIP84_17255) hns 3596409..3596735 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  KIP84_RS17255 (KIP84_17260) - 3596930..3597370 (-) 441 WP_032006824.1 thioesterase family protein -
  KIP84_RS17260 (KIP84_17265) - 3597378..3598571 (-) 1194 WP_032006826.1 membrane protein -
  KIP84_RS17265 (KIP84_17270) - 3598581..3599423 (-) 843 WP_213688975.1 hypothetical protein -
  KIP84_RS17270 (KIP84_17275) - 3599432..3600199 (-) 768 WP_086265343.1 uroporphyrinogen-III synthase -
  KIP84_RS17275 (KIP84_17280) hemC 3600203..3601120 (-) 918 WP_199114149.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=568787 KIP84_RS17250 WP_000801427.1 3596409..3596735(-) (hns) [Acinetobacter sp. BHS4]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=568787 KIP84_RS17250 WP_000801427.1 3596409..3596735(-) (hns) [Acinetobacter sp. BHS4]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTCGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1