Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   KIP84_RS16735 Genome accession   NZ_CP075323
Coordinates   3480558..3482786 (+) Length   742 a.a.
NCBI ID   WP_213688945.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3475558..3487786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS16710 (KIP84_16715) lnt 3476007..3477566 (+) 1560 WP_101664169.1 apolipoprotein N-acyltransferase -
  KIP84_RS16715 (KIP84_16720) - 3477568..3477906 (-) 339 WP_005804172.1 tRNA-binding protein -
  KIP84_RS16720 (KIP84_16725) - 3478051..3478395 (-) 345 WP_005804170.1 hypothetical protein -
  KIP84_RS16725 (KIP84_16730) gspG 3478664..3479179 (-) 516 WP_019768050.1 type II secretion system major pseudopilin GspG -
  KIP84_RS16730 (KIP84_16735) gspF 3479203..3480408 (-) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  KIP84_RS16735 (KIP84_16740) priA 3480558..3482786 (+) 2229 WP_213688945.1 primosomal protein N' Machinery gene
  KIP84_RS16740 (KIP84_16745) - 3482863..3484707 (+) 1845 WP_199977333.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  KIP84_RS16745 (KIP84_16750) - 3484872..3485747 (+) 876 WP_005079292.1 Hsp33 family molecular chaperone HslO -
  KIP84_RS16750 (KIP84_16755) - 3485886..3486497 (+) 612 WP_005079293.1 LysE family translocator -
  KIP84_RS16755 (KIP84_16760) - 3486644..3487600 (+) 957 WP_063098020.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84024.73 Da        Isoelectric Point: 8.4603

>NTDB_id=568783 KIP84_RS16735 WP_213688945.1 3480558..3482786(+) (priA) [Acinetobacter sp. BHS4]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERAHVGSRVAISFGRQNLIGIITEKVDPSESFTGTFQLKAISDLL
DEEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQSLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=568783 KIP84_RS16735 WP_213688945.1 3480558..3482786(+) (priA) [Acinetobacter sp. BHS4]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGATACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCTCACGTAGGCTCACGCGTCGCTATTTCATTTGGACGCCAAAATCTGA
TTGGCATCATTACTGAAAAAGTTGATCCAAGTGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGACCTTTTA
GATGAAGAACCAATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCAGCTCAGTATTACCAATTTCCAATTGGTGA
GGTCATGCAAACTGCCCTACCTGCATTATTGCGTCAAGGCAAACCAATGGATGTTTTGTTCCATCTTTGGAAAATCACAC
CATGTGATAATGTTGAAGCACTTCTTAAACGCTCTGTTAAACAACAAGATGCGTATCAAATTTTAAAGTTACACCCTGCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCACTTCAAAAGAAGGGACTAGTCGA
CTGTACGCTTGAACCGCACGACTTTAGCCCATCACCTGTTCAATTGGCACAAATGCCACTTACACTCAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCGTAAACGCACAGCATCAATACCAAGCTTTTTTGTTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTCAAGCAAGGTAAGCAAGTACTGGTATTAGTCCCAGAAATTGGTCT
AACCCCTCAAACGATTTCTCGTTTTAAGTCTCGTTTTAACTGTGATATTGCTCTATTGCACTCAGGCTTAAATGACTCCA
AACGCTTACAAGCATGGCAACAGGCTCAGACTGGCAAAGCATCTATTATTTTAGGAACCCGCTCTGCGATCTATACGCCA
CTGCCACGTTTGGGCTTAATCATTCTAGATGAAGAACATGACCTCTCTTATAAACAGCAAGAAGGTTTCCGTTACCATGC
ACGTGATGTCGCACTGTACCGAGGCCACTTACAAAACTGTCCAGTTATTTTAGGTTCAGCAACACCGAGCATCGATAGTT
ATTATTTGGTCGAAACTGGTAAATTAACTTCACTGCAACTTAACCAACGTGCAGGCCATGCGCTTTTGCCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAACATGGAATTAGCCAATCTCTTATTGAGCAAATCAAGCATACGTTAGCGAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTCTGTGAAAGTTGTGGGTGGCAAGCAA
ATTGTCCACATTGTGATGCACATTTTACGTTGCACACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGTACTGTT
CATCGCTTACCCGATCACTGCCCTGAATGCCAGCAAAAAAGCCTAAAAACCCTAGGTGCTGGAACAGCTAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGACTATGATGTGATTCGGGTTGACCGTGACAGCACCAGTCGTGTCGGTAGCTGGCAAA
AAATCTATGATCGGATTCATCAAAACAAACCAACAATTTTGCTTGGTACTCAAATGTTGGCAAAAGGTCATCATTTTCCA
CACGTGACTTTGGTTGCTATTTTAGATATTGATGCTGGGTTACTGAGTGTCGACATTCGTGCGCCAGAACGTACTGCACA
GTTAATTGTACAAGTCGCGGGTCGTGCAGGTCGTGGTGAACATAAAGGCCATGTTTATTTACAGACCTTAAGACCAGATC
ATCCATTACTCACCACACTCATCGAAAAAGATTATCGGGCAGTTGCTAAACAGACTCTTGCGGAACGTAAAGTCGCATTG
CTGCCGCCTTATCGTTATGCCGTACTGATACGTGCGGAATCCAAAGATCGTGACTATACCTTACATTTTTTAAATGAAGC
GGCGGAACAATTACGCCAAATTGCAGGTGATATTGTTGATATTTGGGGACCAATTCCAGCCCCTATGGAGCGTAAAGCGG
GACGCTACCGCGCCCACATGGTGATTTTATCTGCCGACCGTGCTCGCCTCCATTTTTACTTAAGACAATGGTGGTCACAA
TTGGTTCATGCACCTCGGCAGCATCAACTTCGACTCTCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

98.113

100

0.981