Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   ML603_RS07525 Genome accession   NZ_CP092887
Coordinates   1527919..1529904 (-) Length   661 a.a.
NCBI ID   WP_241066998.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain Karl     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1522919..1534904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ML603_RS07500 (ML603_07500) - 1522931..1524181 (-) 1251 WP_241066993.1 glutamate-5-semialdehyde dehydrogenase -
  ML603_RS07505 (ML603_07505) proB 1524174..1524995 (-) 822 WP_241066994.1 glutamate 5-kinase -
  ML603_RS07510 (ML603_07510) - 1525059..1526687 (-) 1629 WP_241066996.1 ABC transporter permease -
  ML603_RS07515 (ML603_07515) - 1526692..1527426 (-) 735 WP_241066997.1 ABC transporter ATP-binding protein -
  ML603_RS07520 (ML603_07520) - 1527460..1527726 (-) 267 WP_138126291.1 bacteriocin immunity protein -
  ML603_RS07525 (ML603_07525) recP/tkt 1527919..1529904 (-) 1986 WP_241066998.1 transketolase Machinery gene
  ML603_RS07530 (ML603_07530) fsa 1530122..1530766 (-) 645 WP_002983569.1 fructose-6-phosphate aldolase -
  ML603_RS07535 (ML603_07535) - 1530888..1532399 (-) 1512 WP_138126295.1 helix-turn-helix domain-containing protein -
  ML603_RS07540 (ML603_07540) - 1532389..1533729 (-) 1341 WP_192942309.1 FAD/NAD(P)-binding oxidoreductase -
  ML603_RS07545 (ML603_07545) - 1533840..1534541 (-) 702 WP_241066999.1 MIP/aquaporin family protein -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 71491.30 Da        Isoelectric Point: 4.6485

>NTDB_id=568783 ML603_RS07525 WP_241066998.1 1527919..1529904(-) (recP/tkt) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
MTFDAIDQLAVNTVRTLSMDAIQAANSGHPGLPMGAAPMAYVLWNHFMNINPKTSRNWSNRDRFILSAGHGSAMLYSLLH
LAGYDLSVEDLKNFRQWGSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTFALNGDG
DLMEGVSQEAASMAGHLKLGKLVLLYDSNDISLDGPTSMSFTEDVKRRFEAYGWQYILVKDGNDLEEIAAAIEAAKAETE
KPTIIEVKTIIGFGAEKQGTSAVHGAPLGAEGIVFAKNAYKWTHQDFEVPTEVTERFAQGLQARGEKAEQAWNDLFAAYQ
AEYPELAAEYQKAFANEAAQVELEAHELGSSMASRVSSQQAIQQISEQVASFWGGSADLSASNNTMVKAETDFQPGHYEG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQSLPTVYVMTHDSIAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRAIAETDRPTMLVLTRQNLPVLEGTKELAEDGLNKGAYILSEAKGDLDGILIATGSEV
KLAMDTQEALEAEGIHVRVVSMPSQNIFDEQSAEYKESILPAAVTKRLAIEAGSSFGWAKYVGLAGKTLTIDTWGASAPG
NRIFEEYGFTVANATELYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=568783 ML603_RS07525 WP_241066998.1 1527919..1529904(-) (recP/tkt) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
ATGACATTTGATGCAATTGACCAGTTGGCAGTAAATACTGTCCGCACCCTATCAATGGATGCCATTCAAGCGGCAAATTC
TGGACACCCAGGCCTTCCAATGGGTGCAGCACCTATGGCCTACGTTCTTTGGAATCACTTCATGAACATTAATCCAAAAA
CAAGCCGTAATTGGTCAAACAGAGACCGTTTTATCCTATCAGCGGGACACGGAAGTGCTATGCTTTATAGCTTGTTACAC
TTAGCTGGTTATGATTTATCTGTAGAAGATTTAAAGAACTTCCGTCAATGGGGTTCTAAAACACCAGGTCACCCAGAAGT
TAATCATACCGATGGTGTGGAGGCAACTACAGGACCTCTTGGTCAAGGGATTGCGAATGCTGTTGGTATGGCCATGGCAG
AAGCTCATCTAGCAGCTAAATTTAACAAACCAGGATTTGACATCGTTGATCACTACACATTTGCTTTGAATGGTGACGGT
GACCTTATGGAAGGTGTCAGTCAAGAAGCAGCAAGTATGGCAGGACACTTAAAACTTGGCAAATTGGTCTTGCTTTACGA
TTCAAACGATATCTCTCTTGATGGTCCAACCTCAATGTCCTTTACAGAAGATGTTAAACGACGTTTCGAAGCTTACGGCT
GGCAATATATCCTTGTTAAAGACGGAAACGATTTAGAAGAAATTGCAGCCGCTATCGAAGCAGCTAAGGCTGAAACTGAG
AAACCAACCATCATCGAAGTCAAAACCATTATTGGTTTTGGTGCTGAAAAACAGGGCACATCAGCTGTTCATGGTGCTCC
TCTTGGGGCAGAAGGTATTGTTTTTGCTAAGAATGCTTACAAATGGACTCACCAAGACTTTGAAGTTCCTACTGAAGTGA
CTGAACGTTTTGCTCAAGGCCTTCAAGCACGTGGTGAAAAAGCAGAACAAGCCTGGAATGACTTGTTTGCAGCTTATCAA
GCAGAATATCCTGAATTGGCAGCAGAATACCAAAAAGCCTTTGCTAACGAAGCTGCTCAAGTAGAACTTGAAGCGCACGA
ACTTGGTAGCTCAATGGCGAGTCGTGTTTCTAGCCAACAAGCCATCCAACAAATCTCAGAACAAGTAGCCTCTTTCTGGG
GTGGATCAGCAGACCTTTCAGCATCTAACAACACAATGGTTAAGGCTGAAACAGATTTCCAACCAGGTCATTATGAAGGC
CGTAACATCTGGTTTGGCGTTCGTGAATTTGCCATGGCAGCAGCTATGAATGGTATTGCCCTTCACGGTGGAACACGCGT
TTACGGCGGAACCTTCTTTGTCTTCTCAAACTATCTTCTTCCAGCTGTTCGTATGGCAGCCCTCCAAAGCTTACCAACGG
TTTATGTCATGACACATGATTCTATCGCTGTCGGTGAAGATGGGCCAACGCACGAACCAATTGAACAATTGGCAAGTGTT
CGTTCAATGCCTAACTTGAACGTTATTCGTCCAGCAGACGGTAACGAGACAAATGCTGCTTGGAAACGTGCCATTGCTGA
AACAGATCGCCCAACTATGCTTGTATTGACTCGTCAAAACCTTCCAGTGCTTGAGGGCACAAAAGAATTGGCAGAAGATG
GTCTTAACAAAGGGGCTTACATCTTGTCAGAAGCCAAAGGCGACCTTGACGGTATCTTGATTGCAACAGGTTCAGAAGTG
AAACTGGCAATGGATACTCAAGAAGCTCTTGAAGCAGAAGGCATTCATGTGCGCGTGGTATCTATGCCATCACAAAATAT
CTTTGACGAACAGTCAGCAGAGTATAAAGAAAGCATTCTACCAGCAGCTGTGACTAAACGTCTCGCTATCGAAGCAGGTT
CAAGCTTTGGTTGGGCAAAATATGTTGGCCTAGCAGGAAAAACATTGACCATTGACACTTGGGGTGCTTCAGCTCCAGGA
AATCGTATCTTCGAAGAATATGGTTTCACTGTGGCAAATGCAACTGAGTTATACAAATCACTCTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.471

99.546

0.552