Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   KIP84_RS02465 Genome accession   NZ_CP075323
Coordinates   502371..503255 (+) Length   294 a.a.
NCBI ID   WP_213689259.1    Uniprot ID   -
Organism   Acinetobacter sp. BHS4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 497371..508255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP84_RS02440 (KIP84_02440) - 497684..498931 (-) 1248 WP_213689257.1 YihY family inner membrane protein -
  KIP84_RS02445 (KIP84_02445) wrbA 499293..499895 (+) 603 WP_171518721.1 NAD(P)H:quinone oxidoreductase -
  KIP84_RS02450 (KIP84_02450) - 499947..500522 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  KIP84_RS02455 (KIP84_02455) - 500595..501308 (-) 714 WP_002119525.1 DUF3108 domain-containing protein -
  KIP84_RS02460 (KIP84_02460) - 501467..502138 (-) 672 WP_213689258.1 hypothetical protein -
  KIP84_RS02465 (KIP84_02465) tonB2 502371..503255 (+) 885 WP_213689259.1 TonB family protein Machinery gene
  KIP84_RS02470 (KIP84_02470) ybeY 503307..503783 (-) 477 WP_213689260.1 rRNA maturation RNase YbeY -
  KIP84_RS02475 (KIP84_02475) - 503793..504881 (-) 1089 WP_002119513.1 PhoH family protein -
  KIP84_RS02480 (KIP84_02480) miaB 504919..506370 (-) 1452 WP_063097843.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33724.26 Da        Isoelectric Point: 7.2527

>NTDB_id=568764 KIP84_RS02465 WP_213689259.1 502371..503255(+) (tonB2) [Acinetobacter sp. BHS4]
MLNKRSLSIEPFHYWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQTDQQGSGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKIHQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=568764 KIP84_RS02465 WP_213689259.1 502371..503255(+) (tonB2) [Acinetobacter sp. BHS4]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATTATTGGTGGCAAGACCGAGTCTTTATTGCTGCAACAATATT
GGCAATCTTACTGCATATTTTTGTGTTGCTCATTCACTTTGCCATGCCTAGCCCATCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCATCAGGCAGATTTTTTAGCGCAAACAGATCAGCAAGGCTCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCATCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATTAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTATCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGGGGAATTCGTGCAATCCGTCTG
CTTGAAAGTTCAGGGCATTCAATACTAGACGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCCAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.095

100

0.881