Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   SAMI_RS03345 Genome accession   NZ_AP017320
Coordinates   703086..703760 (+) Length   224 a.a.
NCBI ID   WP_001166500.1    Uniprot ID   Q99VW2
Organism   Staphylococcus aureus strain MI     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 698086..708760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMI_RS03315 (SAMI_0618) - 698301..699368 (+) 1068 WP_000980137.1 membrane protein -
  SAMI_RS03320 (SAMI_0619) - 699519..700562 (+) 1044 WP_001030772.1 alpha/beta hydrolase -
  SAMI_RS03330 (SAMI_0620) - 700891..701319 (+) 429 WP_000198504.1 hypothetical protein -
  SAMI_RS03335 (SAMI_0621) - 701528..702034 (-) 507 WP_000940129.1 GNAT family N-acetyltransferase -
  SAMI_RS03340 (SAMI_0622) graX 702147..703070 (+) 924 WP_000802953.1 auxiliary protein GraX/ApsX -
  SAMI_RS03345 (SAMI_0623) braR 703086..703760 (+) 675 WP_001166500.1 response regulator transcription factor GraR/ApsR Regulator
  SAMI_RS03350 (SAMI_0624) graS 703753..704793 (+) 1041 WP_001061264.1 histidine kinase GraS/ApsS -
  SAMI_RS03355 (SAMI_0625) vraF 704937..705698 (+) 762 WP_000985996.1 ABC transporter ATP-binding protein VraF -
  SAMI_RS03360 (SAMI_0626) vraG 705688..707577 (+) 1890 WP_000143615.1 ABC transporter permease VraG -

Sequence


Protein


Download         Length: 224 a.a.        Molecular weight: 26065.87 Da        Isoelectric Point: 4.3563

>NTDB_id=56876 SAMI_RS03345 WP_001166500.1 703086..703760(+) (braR) [Staphylococcus aureus strain MI]
MQILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKYDGFYWCRKMREVSNVPILFLSSR
DNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTAEEKRTLTWQDAVVDLSKDSIQKGDDTIFLSKTEMIIL
EILITKKNQIVSRDTIITALWDDEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGYMAHE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=56876 SAMI_RS03345 WP_001166500.1 703086..703760(+) (braR) [Staphylococcus aureus strain MI]
ATGCAAATACTACTAGTAGAAGATGACAATACTTTGTTTCAAGAATTGAAAAAAGAATTAGAACAATGGGATTTTAATGT
TGCTGGTATTGAAGATTTCGGCAAAGTAATGGATACATTTGAAAGTTTTAATCCTGAAATTGTTATATTGGATGTTCAAT
TACCTAAATATGATGGGTTTTATTGGTGCAGAAAAATGAGAGAAGTTTCCAACGTACCAATATTATTTTTATCATCTCGT
GATAATCCAATGGATCAAGTGATGAGTATGGAACTTGGCGCAGATGATTATATGCAAAAACCTTTCTATACCAATGTATT
AATTGCTAAATTACAAGCGATTTATCGTCGTGTCTATGAGTTTACAGCTGAAGAAAAACGTACATTGACTTGGCAAGATG
CTGTCGTTGATCTATCAAAAGATAGTATACAAAAAGGTGACGATACGATTTTTCTATCCAAAACAGAAATGATTATATTA
GAAATTCTTATTACCAAAAAAAATCAAATCGTTTCGAGAGATACAATTATCACTGCATTATGGGATGATGAAGCATTTGT
TAGTGATAATACGTTAACAGTAAATGTGAATCGTTTACGAAAAAAATTATCTGAAATTAGTATGGATAGTGCAATCGAAA
CAAAAGTAGGAAAAGGATATATGGCTCATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q99VW2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.455

98.214

0.397


Multiple sequence alignment