Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KI608_RS08675 Genome accession   NZ_CP075192
Coordinates   1841735..1843096 (+) Length   453 a.a.
NCBI ID   WP_226451601.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 132     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1836735..1848096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI608_RS08645 (KI608_08635) rimI 1836956..1837417 (+) 462 WP_226451595.1 ribosomal protein S18-alanine N-acetyltransferase -
  KI608_RS08650 (KI608_08640) - 1837414..1838199 (+) 786 WP_226451596.1 uracil-DNA glycosylase family protein -
  KI608_RS08655 (KI608_08645) lplT 1838196..1839461 (-) 1266 WP_226451597.1 lysophospholipid transporter LplT -
  KI608_RS08660 (KI608_08650) - 1839508..1839753 (-) 246 WP_226451598.1 hypothetical protein -
  KI608_RS08665 (KI608_08655) - 1839724..1840626 (+) 903 WP_226451599.1 LysR family transcriptional regulator -
  KI608_RS08670 (KI608_08660) alr 1840623..1841735 (+) 1113 WP_226451600.1 alanine racemase -
  KI608_RS08675 (KI608_08665) radA 1841735..1843096 (+) 1362 WP_226451601.1 DNA repair protein RadA Machinery gene
  KI608_RS08680 (KI608_08670) - 1843124..1845211 (+) 2088 WP_226451602.1 bifunctional diguanylate cyclase/phosphodiesterase -
  KI608_RS08685 (KI608_08675) - 1845208..1847697 (+) 2490 WP_226451603.1 ABC transporter permease -
  KI608_RS08690 (KI608_08680) - 1847694..1848092 (-) 399 WP_226451604.1 ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48594.11 Da        Isoelectric Point: 7.4149

>NTDB_id=568602 KI608_RS08675 WP_226451601.1 1841735..1843096(+) (radA) [Ferribacterium limneticum strain 132]
MAKVKTIYSCTECGATSPKWQGQCPGCNDWNTLVETVAEKAPTNSRFESLAPTARLQNLSEIEAREVERIATGISEFDRA
LGGGLVHGGVVLIGGDPGIGKSTLLLQALAHLSLENKVLYVSGEESGEQVALRARRLGLDSRRLQLMAEINLERILATLQ
AEKPVVAVIDSIQTLWSDQLSSAPGSVAQVRECAAQLTRLAKQAGITVILVGHVTKEGALAGPRVLEHIVDTVLYFEGDT
HSSFRLVRAFKNRFGAVNELGVFAMTETGLKGVSNPSALFLSQHGQDVAGSCVMVTQEGTRPLLVEIQALVDTSHGNPRR
LTVGLDPQRLAMLLAVLHRHAGIVCFDQDVFVNAVGGVKITEPAADLAVLLSITSSLKNKPLPSKLIVFGEVGLAGEIRP
APRGQERLKEAAKLGFTRALIPEANRPKQAIPGMEVIAVKRVEEAVARIREME

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=568602 KI608_RS08675 WP_226451601.1 1841735..1843096(+) (radA) [Ferribacterium limneticum strain 132]
ATGGCCAAAGTCAAAACCATTTACTCCTGTACCGAATGCGGAGCGACCAGTCCGAAGTGGCAGGGGCAGTGTCCCGGTTG
CAATGACTGGAACACGCTGGTTGAAACGGTGGCCGAAAAGGCGCCCACCAACAGCCGTTTCGAATCACTGGCCCCGACGG
CCAGGTTGCAGAATCTGTCGGAGATCGAAGCGCGGGAAGTCGAGCGGATTGCTACCGGCATTAGCGAGTTCGACCGGGCG
CTGGGCGGTGGACTGGTTCATGGCGGTGTCGTGCTGATCGGTGGCGACCCGGGGATCGGTAAAAGTACGCTGCTCTTGCA
GGCACTGGCGCATCTTTCGCTCGAAAACAAGGTGCTCTATGTCAGCGGTGAGGAATCGGGCGAGCAGGTCGCGCTGAGAG
CTCGCCGCCTGGGGCTGGATAGCCGTCGCCTGCAATTGATGGCCGAGATCAATCTCGAACGCATCCTTGCCACCCTGCAG
GCGGAAAAGCCCGTTGTTGCCGTGATCGACTCGATTCAGACCCTGTGGTCCGATCAGCTGTCCAGTGCGCCGGGTTCGGT
GGCGCAAGTCCGCGAATGCGCGGCGCAACTGACGCGTCTGGCCAAGCAGGCTGGCATCACGGTGATTCTGGTCGGTCATG
TGACGAAGGAGGGCGCCCTGGCCGGGCCGCGTGTGCTTGAACATATCGTCGACACCGTGCTCTATTTCGAAGGCGACACG
CATTCCAGCTTCCGACTGGTGCGGGCCTTCAAGAACCGTTTCGGCGCTGTCAATGAGTTGGGTGTCTTTGCCATGACCGA
AACCGGGCTGAAGGGGGTCAGCAACCCGTCGGCCCTGTTCCTGTCGCAGCATGGACAGGATGTGGCCGGTTCCTGCGTGA
TGGTGACGCAGGAGGGGACGCGCCCTCTGCTGGTTGAAATCCAGGCCCTGGTCGATACCTCGCATGGCAACCCGCGGCGT
CTGACTGTCGGACTCGACCCGCAGCGCCTGGCCATGCTGCTGGCCGTCTTGCATCGGCATGCCGGTATTGTCTGTTTCGA
TCAGGATGTATTCGTGAACGCGGTCGGTGGGGTCAAGATTACTGAGCCGGCTGCCGATCTGGCTGTGCTGCTATCGATCA
CATCTTCATTAAAAAACAAGCCACTGCCATCGAAACTTATTGTGTTTGGTGAAGTTGGGCTGGCCGGAGAAATCCGTCCG
GCCCCGCGTGGTCAGGAACGACTGAAGGAAGCCGCCAAACTCGGATTTACCCGTGCCCTGATCCCGGAGGCGAATCGTCC
CAAGCAGGCGATTCCCGGCATGGAGGTCATTGCAGTCAAGCGCGTCGAGGAGGCGGTGGCGCGGATACGCGAGATGGAAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(61-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(356-446)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.549

99.779

0.514
  radA Streptococcus mitis SK321

48.451

99.779

0.483
  radA Streptococcus pneumoniae D39

47.894

99.558

0.477
  radA Streptococcus pneumoniae TIGR4

47.894

99.558

0.477
  radA Streptococcus pneumoniae R6

47.894

99.558

0.477
  radA Streptococcus pneumoniae Rx1

47.894

99.558

0.477
  radA Streptococcus mitis NCTC 12261

47.672

99.558

0.475