Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KI617_RS17720 Genome accession   NZ_CP075191
Coordinates   3690569..3691543 (-) Length   324 a.a.
NCBI ID   WP_319004124.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 128     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3685569..3696543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI617_RS17705 (KI617_17660) - 3687378..3689030 (-) 1653 WP_226448542.1 NAD(P)/FAD-dependent oxidoreductase -
  KI617_RS17710 (KI617_17665) ftsX 3689023..3689922 (-) 900 WP_226448544.1 permease-like cell division protein FtsX -
  KI617_RS17715 (KI617_17670) - 3689919..3690572 (-) 654 WP_226448546.1 cell division ATP-binding protein FtsE -
  KI617_RS17720 (KI617_17675) pilA 3690569..3691543 (-) 975 WP_319004124.1 signal recognition particle-docking protein FtsY Machinery gene
  KI617_RS17725 (KI617_17680) - 3691676..3693034 (+) 1359 WP_226448550.1 pitrilysin family protein -
  KI617_RS17730 (KI617_17685) - 3693047..3693454 (+) 408 WP_226448552.1 hypothetical protein -
  KI617_RS17735 (KI617_17690) - 3693451..3694740 (+) 1290 WP_226448554.1 pitrilysin family protein -
  KI617_RS17740 (KI617_17695) rsmD 3694737..3695279 (+) 543 WP_226448556.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KI617_RS17745 (KI617_17700) coaD 3695276..3695770 (+) 495 WP_226448558.1 pantetheine-phosphate adenylyltransferase -
  KI617_RS17750 (KI617_17705) - 3695788..3696045 (+) 258 WP_226448560.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35225.56 Da        Isoelectric Point: 6.9786

>NTDB_id=568582 KI617_RS17720 WP_319004124.1 3690569..3691543(-) (pilA) [Ferribacterium limneticum strain 128]
MFSFLKKSGPETKAEVPAEKAAAPSWRERLFKGLAKTRAQWGGKLKSIFSRGKVDDELLEELETLLLTSDCGIEATQHLL
DELKKAAKRDKLDTPEAIQKALHDALLETLQPLEQPLDFSTHKPFVIMIAGVNGAGKTTSIGKLAKYFQTQGKSVLLAAG
DTFRAAAREQLETWGERNNVTVIAQDNGDPAAVVFDAISAAKARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIQKIEPE
GPHETLLVLDANIGQNALQQVKAFDKAINVTGLVLTKLDGTAKGGVVTAIARQCPKPIRFIGVGEQIDDLRPFSAKDFVD
ALFE

Nucleotide


Download         Length: 975 bp        

>NTDB_id=568582 KI617_RS17720 WP_319004124.1 3690569..3691543(-) (pilA) [Ferribacterium limneticum strain 128]
ATGTTCAGTTTCCTGAAAAAATCCGGCCCCGAGACCAAGGCCGAAGTTCCGGCTGAAAAGGCCGCCGCGCCCAGCTGGCG
CGAACGCCTGTTCAAGGGCCTGGCCAAGACCCGTGCCCAGTGGGGCGGCAAGCTCAAATCCATCTTTTCGCGCGGCAAGG
TCGACGACGAACTGCTCGAGGAACTGGAAACCCTGCTGCTGACCAGCGATTGCGGCATCGAGGCAACGCAGCACCTGCTC
GACGAGCTGAAGAAGGCCGCCAAGCGCGACAAGCTGGACACGCCCGAGGCCATTCAGAAGGCGCTGCACGATGCCCTGCT
CGAAACCCTGCAGCCGCTTGAGCAGCCGCTCGATTTTTCGACGCACAAGCCGTTCGTGATCATGATTGCCGGGGTCAATG
GCGCCGGCAAGACCACCTCGATCGGCAAGCTGGCCAAGTATTTCCAGACCCAGGGCAAGAGCGTTCTGCTTGCCGCCGGC
GACACCTTCCGCGCCGCCGCCCGCGAACAGCTTGAAACCTGGGGCGAGCGCAACAACGTCACGGTCATCGCCCAGGACAA
TGGTGACCCGGCGGCAGTGGTCTTCGATGCCATTTCGGCCGCCAAGGCGCGCGGCATCGACATCGTGCTGGCCGACACGG
CCGGCCGCCTGCCAACGCAGTTGCACCTGATGGAAGAAATCGCCAAGGTCAGACGCGTCATCCAGAAGATCGAGCCGGAA
GGCCCGCACGAAACCCTGCTCGTGCTCGATGCGAATATCGGCCAGAACGCCCTGCAGCAGGTCAAGGCCTTCGACAAGGC
GATCAACGTCACCGGCCTAGTCCTGACCAAGCTCGACGGTACGGCCAAGGGCGGCGTCGTCACGGCGATTGCCCGGCAGT
GTCCGAAGCCGATCCGCTTCATCGGGGTTGGCGAGCAGATCGACGATCTTCGCCCCTTCTCCGCCAAAGATTTCGTCGAC
GCCCTGTTCGAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(124-323)

SRP54-type protein, helical bundle domain (SRP54_N)

(42-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

63.333

92.593

0.586