Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KI613_RS18580 Genome accession   NZ_CP075190
Coordinates   3887649..3888635 (-) Length   328 a.a.
NCBI ID   WP_226402263.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 76     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3882649..3893635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI613_RS18565 (KI613_18470) - 3884509..3886113 (-) 1605 WP_226402257.1 FAD-dependent oxidoreductase -
  KI613_RS18570 (KI613_18475) ftsX 3886106..3887002 (-) 897 WP_226402259.1 permease-like cell division protein FtsX -
  KI613_RS18575 (KI613_18480) - 3886999..3887652 (-) 654 WP_226402261.1 cell division ATP-binding protein FtsE -
  KI613_RS18580 (KI613_18485) pilA 3887649..3888635 (-) 987 WP_226402263.1 signal recognition particle-docking protein FtsY Machinery gene
  KI613_RS18585 (KI613_18490) - 3888745..3890103 (+) 1359 WP_226402265.1 pitrilysin family protein -
  KI613_RS18590 (KI613_18495) - 3890116..3890520 (+) 405 WP_226402267.1 hypothetical protein -
  KI613_RS18595 (KI613_18500) - 3890517..3891806 (+) 1290 WP_226402269.1 pitrilysin family protein -
  KI613_RS18600 (KI613_18505) rsmD 3891810..3892364 (+) 555 WP_226402271.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KI613_RS18605 (KI613_18510) coaD 3892361..3892855 (+) 495 WP_226402273.1 pantetheine-phosphate adenylyltransferase -
  KI613_RS18610 (KI613_18515) - 3892876..3893133 (+) 258 WP_226402276.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 35603.04 Da        Isoelectric Point: 7.3876

>NTDB_id=568558 KI613_RS18580 WP_226402263.1 3887649..3888635(-) (pilA) [Ferribacterium limneticum strain 76]
MFSFLKKSGSDSKAETKADVPAEAAAPSWRERLFKGLAKTRAQWGGKLKTIFSRGKVDDELLEELETLLLTSDCGVEATT
HLLDELKKAAKRDKLDTPDAIQKALHDALLETLLPLEKPLDVSTHKPFVIMIAGVNGAGKTTSIGKLAKYFQMQGKSVLL
AAGDTFRAAAREQLETWGERNNVTVIAQDKGDPAAVVFDAISAAKARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIQKI
DPEGPHETLLVLDANIGQNALQQVRAFDKAINVTGLVLTKLDGTAKGGVVTAIARQCPKPIRFIGVGEQIDDLRPFSARD
FVDAMFEQ

Nucleotide


Download         Length: 987 bp        

>NTDB_id=568558 KI613_RS18580 WP_226402263.1 3887649..3888635(-) (pilA) [Ferribacterium limneticum strain 76]
ATGTTCAGTTTCCTGAAAAAATCCGGCAGCGACAGTAAAGCCGAGACCAAGGCCGACGTCCCGGCCGAAGCTGCCGCTCC
CTCGTGGCGCGAGCGCCTGTTCAAGGGTCTGGCCAAGACCCGTGCCCAGTGGGGCGGCAAGCTCAAAACCATTTTCTCGC
GCGGCAAGGTCGACGACGAACTGCTGGAGGAACTCGAAACCCTTTTGCTGACCAGCGATTGCGGTGTCGAGGCAACGACC
CACTTGCTTGACGAGCTGAAAAAGGCGGCCAAGCGCGACAAGCTCGATACGCCGGACGCCATTCAGAAGGCGCTGCACGA
TGCCCTGCTCGAAACCTTGCTGCCGCTCGAAAAGCCGCTCGACGTGTCGACGCACAAGCCTTTCGTGATCATGATTGCCG
GCGTCAACGGCGCCGGCAAGACGACCTCGATCGGCAAGCTGGCCAAGTATTTCCAGATGCAGGGCAAGAGCGTGCTGCTC
GCTGCCGGTGATACCTTCCGCGCCGCCGCCCGCGAACAGCTTGAAACCTGGGGCGAGCGCAACAACGTGACGGTCATCGC
GCAGGACAAGGGCGATCCTGCCGCCGTGGTCTTTGATGCCATTTCAGCCGCCAAGGCGCGTGGCATCGACATCGTGCTGG
CCGATACGGCCGGTCGTTTGCCGACCCAGTTGCACCTCATGGAAGAAATCGCCAAGGTGCGTCGCGTCATCCAGAAAATC
GATCCGGAAGGCCCGCACGAAACGCTGCTCGTCCTCGATGCCAACATCGGTCAGAACGCGCTGCAGCAGGTCAGGGCTTT
CGACAAGGCGATCAACGTCACCGGCCTGGTCCTCACCAAGCTCGACGGCACGGCCAAGGGCGGCGTCGTTACGGCGATTG
CCCGGCAATGCCCGAAGCCGATCCGCTTCATCGGCGTCGGCGAGCAGATCGACGACCTGCGGCCGTTCTCGGCGCGCGAT
TTCGTGGACGCCATGTTCGAGCAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(45-109)

SRP54-type protein, GTPase domain (SRP54)

(127-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

63.333

91.463

0.579