Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KI610_RS17750 Genome accession   NZ_CP075189
Coordinates   3697230..3698216 (-) Length   328 a.a.
NCBI ID   WP_226496273.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 77     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3692230..3703216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI610_RS17735 (KI610_17650) - 3694090..3695592 (-) 1503 WP_226496270.1 FAD-dependent oxidoreductase -
  KI610_RS17740 (KI610_17655) ftsX 3695687..3696583 (-) 897 WP_226496271.1 permease-like cell division protein FtsX -
  KI610_RS17745 (KI610_17660) - 3696580..3697233 (-) 654 WP_226496272.1 cell division ATP-binding protein FtsE -
  KI610_RS17750 (KI610_17665) pilA 3697230..3698216 (-) 987 WP_226496273.1 signal recognition particle-docking protein FtsY Machinery gene
  KI610_RS17755 (KI610_17670) - 3698326..3699684 (+) 1359 WP_226496274.1 pitrilysin family protein -
  KI610_RS17760 (KI610_17675) - 3699697..3700101 (+) 405 WP_226496275.1 hypothetical protein -
  KI610_RS17765 (KI610_17680) - 3700098..3701387 (+) 1290 WP_226496276.1 pitrilysin family protein -
  KI610_RS17770 (KI610_17685) rsmD 3701384..3701938 (+) 555 WP_226496277.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KI610_RS17775 (KI610_17690) coaD 3701935..3702429 (+) 495 WP_226496278.1 pantetheine-phosphate adenylyltransferase -
  KI610_RS17780 (KI610_17695) - 3702450..3702707 (+) 258 WP_226402276.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 35590.09 Da        Isoelectric Point: 7.4372

>NTDB_id=568535 KI610_RS17750 WP_226496273.1 3697230..3698216(-) (pilA) [Ferribacterium limneticum strain 77]
MFSFLKKSGANVKAEAKADVPAEAAAPSWRERLFKGLAKTRAQWGGKLKTIFSRGKVDDELLEELETLLLTSDCGVEATT
HLLDELKKAAKRDKLDTPDAIQKALHDALLETLQPLEKPLDVSTHKPFVIMIAGVNGAGKTTSIGKLAKYFQMQGKSVLL
AAGDTFRAAAREQLETWGERNNVTVIAQDNGDPAAVVFDAISAAKARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIQKI
DPEGPHETLLVLDANIGQNALQQVKAFDKAIHVTGLVLTKLDGTAKGGVVTAIARQCPKPIRFIGVGEQIDDLRPFLARD
FVDAMFEQ

Nucleotide


Download         Length: 987 bp        

>NTDB_id=568535 KI610_RS17750 WP_226496273.1 3697230..3698216(-) (pilA) [Ferribacterium limneticum strain 77]
ATGTTCAGTTTCCTGAAAAAATCCGGCGCCAACGTTAAAGCCGAAGCCAAGGCCGACGTCCCGGCCGAAGCCGCCGCCCC
ATCGTGGCGCGAGCGCCTGTTCAAGGGTCTGGCCAAGACCCGCGCCCAGTGGGGCGGCAAGCTCAAAACCATTTTCTCGC
GCGGCAAGGTCGACGACGAACTGCTCGAAGAGCTCGAAACCCTGCTGTTGACGAGCGATTGCGGTGTCGAAGCGACGACA
CACCTGCTCGACGAGCTCAAAAAGGCCGCCAAGCGCGACAAACTCGATACGCCGGACGCCATCCAGAAGGCGTTGCACGA
CGCCTTGCTGGAAACCCTGCAGCCGCTCGAAAAGCCGCTCGACGTGTCGACGCACAAGCCCTTCGTGATCATGATTGCCG
GCGTCAACGGCGCCGGCAAGACGACCTCGATCGGCAAGCTGGCCAAGTATTTCCAGATGCAGGGCAAGAGCGTGCTGCTG
GCTGCCGGCGACACTTTCCGCGCGGCGGCCCGCGAACAGCTCGAAACCTGGGGCGAGCGCAACAACGTGACGGTCATCGC
CCAGGACAACGGCGACCCAGCCGCCGTGGTCTTCGACGCCATATCGGCGGCCAAGGCGCGCGGCATCGATATCGTGCTGG
CCGATACGGCCGGCCGCCTGCCGACCCAGTTGCACCTCATGGAAGAAATCGCCAAGGTCCGCCGCGTCATTCAGAAAATC
GACCCGGAAGGCCCGCATGAAACCTTGCTCGTCCTCGACGCCAACATTGGCCAGAACGCGTTGCAGCAGGTCAAGGCCTT
CGACAAGGCGATCCACGTCACCGGCCTGGTCCTGACCAAGCTCGACGGCACGGCCAAGGGCGGCGTCGTCACGGCGATCG
CCCGGCAATGCCCGAAGCCGATCCGCTTCATCGGTGTCGGTGAGCAGATCGACGACCTGCGCCCCTTCCTGGCCCGTGAT
TTCGTGGATGCCATGTTCGAGCAATGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(45-109)

SRP54-type protein, GTPase domain (SRP54)

(127-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

63.667

91.463

0.582