Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KI610_RS11465 Genome accession   NZ_CP075189
Coordinates   2376014..2377375 (+) Length   453 a.a.
NCBI ID   WP_226495104.1    Uniprot ID   -
Organism   Ferribacterium limneticum strain 77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2371014..2382375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI610_RS11440 (KI610_11390) rimI 2371123..2371584 (+) 462 WP_226495099.1 ribosomal protein S18-alanine N-acetyltransferase -
  KI610_RS11445 (KI610_11395) - 2371581..2372384 (+) 804 WP_226495100.1 uracil-DNA glycosylase family protein -
  KI610_RS11450 (KI610_11400) lplT 2372446..2373711 (-) 1266 WP_226495101.1 lysophospholipid transporter LplT -
  KI610_RS11455 (KI610_11405) - 2374003..2374905 (+) 903 WP_226495102.1 LysR family transcriptional regulator -
  KI610_RS11460 (KI610_11410) alr 2374902..2376014 (+) 1113 WP_226495103.1 alanine racemase -
  KI610_RS11465 (KI610_11415) radA 2376014..2377375 (+) 1362 WP_226495104.1 DNA repair protein RadA Machinery gene
  KI610_RS11470 (KI610_11420) - 2377403..2379490 (+) 2088 WP_226495105.1 bifunctional diguanylate cyclase/phosphodiesterase -
  KI610_RS11475 (KI610_11425) - 2379487..2381976 (+) 2490 WP_226495106.1 ABC transporter permease -
  KI610_RS11480 (KI610_11430) - 2381973..2382371 (-) 399 WP_226495107.1 ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48448.93 Da        Isoelectric Point: 7.3846

>NTDB_id=568528 KI610_RS11465 WP_226495104.1 2376014..2377375(+) (radA) [Ferribacterium limneticum strain 77]
MAKIKTIYSCTECGATSPKWQGQCPGCNDWNTLVETVAEKAPTNSRFESLAPTARLQNLSEIEAREVDRIATGVGEFDRA
LGGGLVNGAVVLIGGDPGIGKSTLLLQALAHLSLDNKVLYVSGEESGEQVALRARRLGLDTRRLQLMAEINLERILATLQ
AEKPVVAVIDSIQTLWSDQLSSAPGSVAQVRECAAQLTRLAKQAGITVILVGHVTKEGALAGPRVLEHIVDTVLYFEGDT
HSSFRLVRAVKNRFGAVNEIGVFAMTETGLKGVSNPSALFLSQHGQDVAGSCVMVTQEGTRPLLVEIQALVDTSHGNPRR
LTVGLDPQRLAMLLAVLHRHAGIVCFDQDVFVNAVGGVKITEPAADLAVLLSITSSLKNKPLPSKLIVFGEVGLAGEIRP
APRGQERLKEAAKLGFTRALIPEANRPKQAIAGMEVIAVKRVEEAVARIRELE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=568528 KI610_RS11465 WP_226495104.1 2376014..2377375(+) (radA) [Ferribacterium limneticum strain 77]
ATGGCCAAAATCAAAACAATTTATAGCTGCACTGAATGCGGCGCCACCAGCCCGAAATGGCAAGGCCAGTGCCCGGGCTG
CAACGACTGGAACACGCTGGTCGAAACCGTCGCTGAAAAAGCCCCGACCAACAGCCGCTTTGAATCGCTGGCGCCCACCG
CCCGGCTGCAGAACCTCTCGGAAATCGAAGCGCGCGAAGTCGACCGCATCGCCACCGGTGTCGGCGAATTCGACCGGGCG
CTCGGCGGCGGGCTGGTCAACGGCGCCGTCGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGAGCACCTTGCTCCTGCA
GGCGTTGGCCCACCTGTCGCTCGACAACAAGGTGCTCTACGTCAGCGGTGAGGAATCCGGCGAACAGGTCGCCCTGCGCG
CCCGCCGTCTTGGCCTCGATACCCGGCGTTTGCAATTGATGGCCGAGATCAACCTCGAACGCATCCTCGCCACGCTGCAG
GCAGAAAAGCCGGTCGTTGCGGTCATCGATTCGATCCAGACGCTATGGTCCGACCAGCTTTCCAGCGCCCCCGGCTCAGT
CGCCCAGGTGCGCGAATGCGCCGCACAACTGACCCGGCTGGCCAAGCAGGCCGGCATCACGGTGATTCTGGTCGGTCACG
TGACAAAGGAGGGCGCCCTGGCCGGGCCGCGCGTGCTCGAACACATCGTGGACACCGTGCTCTATTTCGAGGGCGACACG
CACTCGAGCTTCCGCCTCGTGCGCGCCGTCAAGAACCGCTTTGGCGCGGTCAATGAAATCGGCGTTTTTGCCATGACGGA
AACCGGCTTGAAAGGCGTTAGCAATCCTTCAGCCCTGTTCCTGTCGCAGCACGGGCAGGACGTGGCGGGTTCTTGTGTGA
TGGTGACGCAGGAGGGCACGCGGCCGCTGCTTGTCGAAATCCAGGCGCTGGTCGATACCTCGCACGGCAATCCGCGCCGG
CTCACGGTCGGCCTGGATCCGCAACGCCTGGCCATGTTGCTGGCGGTTTTGCATCGTCATGCCGGTATCGTCTGCTTCGA
TCAGGATGTTTTCGTCAATGCCGTCGGCGGCGTCAAGATTACCGAGCCTGCGGCCGATTTGGCAGTCTTGTTGTCGATTA
CATCATCGTTAAAAAACAAACCATTGCCGTCGAAACTTATTGTATTTGGTGAAGTTGGTCTGGCCGGTGAGATTCGCCCG
GCACCGCGCGGCCAGGAGCGTTTGAAGGAAGCCGCCAAGCTCGGTTTCACGCGCGCCCTGATTCCTGAGGCGAACCGGCC
CAAACAGGCGATTGCCGGCATGGAAGTCATCGCTGTCAAACGCGTCGAGGAGGCGGTGGCGCGGATCCGCGAGTTGGAAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-218)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(356-446)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.754

100

0.521
  radA Streptococcus pneumoniae Rx1

48.132

100

0.483
  radA Streptococcus pneumoniae D39

48.132

100

0.483
  radA Streptococcus pneumoniae R6

48.132

100

0.483
  radA Streptococcus pneumoniae TIGR4

48.132

100

0.483
  radA Streptococcus mitis SK321

48.026

100

0.483
  radA Streptococcus mitis NCTC 12261

47.912

100

0.481