Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KI612_RS09065 Genome accession   NZ_CP075188
Coordinates   1903607..1904965 (+) Length   452 a.a.
NCBI ID   WP_226443699.1    Uniprot ID   -
Organism   Quatrionicoccus australiensis strain D9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1898607..1909965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI612_RS09040 (KI612_09110) rimI 1898742..1899203 (+) 462 WP_226443670.1 ribosomal protein S18-alanine N-acetyltransferase -
  KI612_RS09045 (KI612_09115) - 1899200..1900024 (+) 825 WP_226443672.1 uracil-DNA glycosylase family protein -
  KI612_RS09050 (KI612_09120) lplT 1900074..1901342 (-) 1269 WP_226443674.1 lysophospholipid transporter LplT -
  KI612_RS09055 (KI612_09125) - 1901613..1902515 (+) 903 WP_226443685.1 LysR substrate-binding domain-containing protein -
  KI612_RS09060 (KI612_09130) alr 1902512..1903606 (+) 1095 WP_226443697.1 alanine racemase -
  KI612_RS09065 (KI612_09135) radA 1903607..1904965 (+) 1359 WP_226443699.1 DNA repair protein RadA Machinery gene
  KI612_RS09070 (KI612_09140) - 1904994..1907081 (+) 2088 WP_226443701.1 bifunctional diguanylate cyclase/phosphodiesterase -
  KI612_RS09075 (KI612_09145) - 1907078..1909564 (+) 2487 WP_226443703.1 ABC transporter permease -
  KI612_RS09080 (KI612_09150) - 1909561..1909956 (-) 396 WP_226443704.1 ATP-binding protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48225.71 Da        Isoelectric Point: 7.3845

>NTDB_id=568507 KI612_RS09065 WP_226443699.1 1903607..1904965(+) (radA) [Quatrionicoccus australiensis strain D9]
MAKVKSIYSCTECGASSPKWQGQCPGCGEWNTLVESVAEKASGHRFESLAPTAKLQNLSEIEARETERIPTGIGEFDRAL
GGGLVPGGVVLIGGDPGIGKSTLLLQALSLLSLGQKVLYISGEESGEQVALRARRLGLDTRQLQLMAEINLERIVATLQV
EQPRVAVIDSIQTLWSDQLSSAPGSVAQVRECAAQLTRLAKQAGITIILVGHVTKDGALAGPRVLEHIVDTVLYFEGDTH
SSFRLVRAVKNRFGAVNELGVFAMTETGLKGVSNPSALFLSQHGQDVAGSCVMVTQEGTRPLLVEIQALVDTSHGNPRRL
TVGLEAQRLAMLLAVLHRHAGIVCFDQDVFVNAVGGVKITEPAADLAVLMSITSSLKNKPLPSKLIVFGEVGLAGEIRPA
PRGQERLKEAAKLGFTRALIPEANRPKQAIAGMEVIAVKRVEEAVARIRELD

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=568507 KI612_RS09065 WP_226443699.1 1903607..1904965(+) (radA) [Quatrionicoccus australiensis strain D9]
GTGGCCAAGGTCAAATCGATTTACAGCTGTACCGAATGCGGTGCGAGCAGCCCGAAGTGGCAGGGCCAATGCCCGGGCTG
TGGCGAGTGGAATACCCTGGTCGAGTCGGTGGCCGAGAAGGCGAGCGGGCATCGTTTCGAGTCGCTGGCGCCGACCGCGA
AGTTGCAGAACCTGTCGGAAATCGAGGCGCGCGAGACCGAGCGCATCCCGACCGGGATCGGTGAATTCGACCGCGCCCTC
GGCGGTGGCCTGGTGCCGGGCGGTGTCGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGAGCACTTTGCTGTTGCAGGC
CTTGTCGCTGCTGTCGTTGGGCCAGAAGGTGCTCTATATCAGCGGCGAGGAGTCCGGCGAACAGGTCGCCCTGCGCGCCC
GCCGGCTCGGCCTCGATACCCGGCAGTTGCAGTTGATGGCCGAAATCAACCTCGAGCGCATCGTCGCGACCTTGCAGGTT
GAGCAGCCGCGCGTCGCGGTCATCGACTCGATCCAGACCCTGTGGTCGGATCAACTGTCGAGTGCGCCGGGCTCGGTGGC
GCAGGTGCGCGAATGCGCGGCACAGTTGACGCGGCTCGCCAAACAGGCCGGCATCACCATCATCCTGGTCGGTCACGTGA
CCAAGGATGGCGCGCTGGCCGGGCCGCGCGTGCTCGAACACATTGTCGATACCGTGCTCTATTTCGAAGGCGACACGCAT
TCCAGCTTCCGCCTGGTGCGTGCCGTCAAGAACCGCTTCGGTGCGGTCAACGAACTCGGCGTCTTCGCGATGACCGAGAC
CGGGCTGAAGGGCGTCAGCAATCCGTCGGCGCTCTTCCTGTCGCAGCACGGCCAGGATGTCGCCGGCTCCTGCGTGATGG
TGACGCAGGAAGGGACGCGACCGTTGCTGGTCGAAATCCAGGCGCTGGTCGATACCTCGCATGGCAATCCCCGTCGCCTG
ACGGTTGGTCTCGAAGCGCAGCGTCTGGCGATGCTGCTCGCTGTGCTGCATCGCCATGCCGGTATCGTCTGTTTCGATCA
GGATGTCTTCGTCAATGCGGTGGGCGGCGTCAAGATTACCGAGCCGGCGGCCGACTTGGCGGTATTGATGTCGATTACTT
CTTCATTGAAAAACAAGCCGTTGCCATCGAAACTTATAGTATTTGGTGAGGTTGGTCTGGCCGGTGAAATCCGGCCGGCG
CCGCGCGGCCAGGAGCGCCTGAAGGAGGCTGCCAAGCTCGGCTTTACGCGGGCGCTGATTCCCGAAGCCAATCGGCCGAA
GCAGGCGATTGCCGGCATGGAGGTGATTGCCGTCAAACGGGTCGAGGAGGCGGTGGCGCGGATTCGCGAGCTGGACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(355-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.535

100

0.52
  radA Streptococcus pneumoniae Rx1

48.132

100

0.485
  radA Streptococcus pneumoniae D39

48.132

100

0.485
  radA Streptococcus pneumoniae R6

48.132

100

0.485
  radA Streptococcus pneumoniae TIGR4

48.132

100

0.485
  radA Streptococcus mitis SK321

48.026

100

0.485
  radA Streptococcus mitis NCTC 12261

47.912

100

0.482