Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KI612_RS02675 Genome accession   NZ_CP075188
Coordinates   556559..557533 (-) Length   324 a.a.
NCBI ID   WP_226442295.1    Uniprot ID   -
Organism   Quatrionicoccus australiensis strain D9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 551559..562533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI612_RS02660 (KI612_02670) - 553307..554941 (-) 1635 WP_226442292.1 FAD-dependent oxidoreductase -
  KI612_RS02665 (KI612_02675) ftsX 554934..555833 (-) 900 WP_226442293.1 permease-like cell division protein FtsX -
  KI612_RS02670 (KI612_02680) - 555830..556483 (-) 654 WP_226442294.1 cell division ATP-binding protein FtsE -
  KI612_RS02675 (KI612_02685) pilA 556559..557533 (-) 975 WP_226442295.1 signal recognition particle-docking protein FtsY Machinery gene
  KI612_RS02680 (KI612_02690) - 557661..559013 (+) 1353 WP_226442296.1 pitrilysin family protein -
  KI612_RS02685 (KI612_02695) - 559024..560319 (+) 1296 WP_226442297.1 pitrilysin family protein -
  KI612_RS02690 (KI612_02700) rsmD 560316..560858 (+) 543 WP_226442298.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KI612_RS02695 (KI612_02705) coaD 560855..561343 (+) 489 WP_226442299.1 pantetheine-phosphate adenylyltransferase -
  KI612_RS02700 (KI612_02710) - 561369..561626 (+) 258 WP_226442300.1 YfhL family 4Fe-4S dicluster ferredoxin -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 34846.11 Da        Isoelectric Point: 7.9021

>NTDB_id=568500 KI612_RS02675 WP_226442295.1 556559..557533(-) (pilA) [Quatrionicoccus australiensis strain D9]
MFSFLKKSAPETKADAQAPAEAAPSWRERLFKGLAKTRAQLGGKLKSIFARGKVDDELLEELETLLLTSDCGVEATQHLL
DELKKAAKRDKLDTPDAIQQALANALLATLQPLEQPLDVGTHKPFVIMIAGVNGAGKTTSIGKLAKYFQNRGKSVLLAAG
DTFRAAAREQLETWGERNNVTVIAQDNGDPAAVVFDAISAAKARGIDVVLADTAGRLPTQLHLMEEIAKVRRVIQKVEPS
GPHETLLVLDANIGQNALQQVKAFDKAINVTGLVLTKLDGSAKGGVVAAIARQCPKPIRFIGVGEQIDDLRPFSARDFVE
ALFE

Nucleotide


Download         Length: 975 bp        

>NTDB_id=568500 KI612_RS02675 WP_226442295.1 556559..557533(-) (pilA) [Quatrionicoccus australiensis strain D9]
ATGTTCAGTTTCCTGAAAAAATCCGCTCCCGAAACCAAGGCCGACGCACAGGCCCCGGCGGAAGCCGCCCCTTCCTGGCG
CGAACGCCTGTTCAAGGGCCTGGCCAAGACACGGGCCCAGCTGGGGGGCAAGCTCAAATCCATCTTCGCCCGCGGCAAGG
TCGACGACGAACTCCTCGAAGAACTCGAAACCCTGCTCCTGACCAGCGACTGCGGCGTCGAAGCAACGCAGCACCTGCTC
GACGAACTGAAAAAAGCCGCCAAGCGCGACAAGCTGGACACCCCTGACGCCATCCAGCAGGCCCTCGCCAACGCCCTGCT
CGCCACGCTGCAGCCGCTCGAGCAGCCGCTCGACGTCGGCACGCACAAGCCCTTCGTGATCATGATCGCGGGCGTCAATG
GCGCCGGCAAGACGACCTCGATCGGCAAACTCGCCAAATACTTCCAGAACCGGGGCAAGAGCGTGCTGCTCGCCGCCGGC
GACACCTTCCGCGCCGCCGCGCGTGAGCAACTTGAAACCTGGGGCGAACGCAACAACGTCACGGTCATCGCCCAGGACAA
CGGCGACCCGGCCGCCGTCGTCTTCGACGCCATCTCGGCGGCCAAGGCGCGCGGCATCGATGTCGTGCTCGCCGACACCG
CCGGCCGCCTGCCGACCCAGCTGCACCTGATGGAAGAAATCGCCAAGGTGCGCCGCGTCATCCAGAAGGTCGAACCGAGC
GGCCCGCACGAAACCCTGCTCGTGCTCGACGCCAACATCGGCCAGAACGCACTGCAGCAGGTCAAGGCCTTCGACAAGGC
GATCAACGTCACCGGCCTCGTCCTGACCAAGCTCGACGGCTCGGCCAAGGGCGGCGTGGTCGCCGCCATCGCCCGCCAGT
GCCCGAAGCCGATCCGCTTCATCGGCGTCGGCGAACAGATCGACGACCTGCGCCCCTTCTCGGCCAGGGATTTTGTCGAG
GCGCTGTTTGAGTAG

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(124-323)

SRP54-type protein, helical bundle domain (SRP54_N)

(41-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

62.667

92.593

0.58