Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MK796_RS03945 Genome accession   NZ_CP092825
Coordinates   808631..809602 (+) Length   323 a.a.
NCBI ID   WP_000876317.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GY8     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 803631..814602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK796_RS03925 (MK796_03925) nrdI 804382..804780 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  MK796_RS03930 (MK796_03930) nrdE 804743..806848 (+) 2106 WP_000855509.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  MK796_RS03935 (MK796_03935) nrdF 806966..807937 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  MK796_RS03940 (MK796_03940) - 808437..808592 (+) 156 WP_000499195.1 hypothetical protein -
  MK796_RS03945 (MK796_03945) ceuB 808631..809602 (+) 972 WP_000876317.1 ABC transporter permease Machinery gene
  MK796_RS03950 (MK796_03950) - 809589..810545 (+) 957 WP_001245572.1 iron chelate uptake ABC transporter family permease subunit -
  MK796_RS03955 (MK796_03955) - 810542..811303 (+) 762 WP_000616873.1 ABC transporter ATP-binding protein -
  MK796_RS03960 (MK796_03960) - 811422..812450 (+) 1029 WP_000754461.1 siderophore ABC transporter substrate-binding protein -
  MK796_RS03965 (MK796_03965) - 812767..813081 (-) 315 WP_001127269.1 CHY zinc finger protein -
  MK796_RS03970 (MK796_03970) murB 813099..814022 (-) 924 WP_241043468.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35654.19 Da        Isoelectric Point: 10.0154

>NTDB_id=568487 MK796_RS03945 WP_000876317.1 808631..809602(+) (ceuB) [Staphylococcus aureus strain GY8]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMEGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=568487 MK796_RS03945 WP_000876317.1 808631..809602(+) (ceuB) [Staphylococcus aureus strain GY8]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTTATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTGCCGCTTTTAGGAATTATGATGGAGGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTAGTAGTAGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.188

99.071

0.467