Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KI614_RS07730 Genome accession   NZ_CP075187
Coordinates   1664159..1665517 (+) Length   452 a.a.
NCBI ID   WP_203466519.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain 98     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1659159..1670517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI614_RS07705 (KI614_07700) rimI 1659315..1659776 (+) 462 WP_226409067.1 ribosomal protein S18-alanine N-acetyltransferase -
  KI614_RS07710 (KI614_07705) - 1659773..1660579 (+) 807 WP_226409069.1 uracil-DNA glycosylase -
  KI614_RS07715 (KI614_07710) lplT 1660606..1661871 (-) 1266 WP_226409071.1 lysophospholipid transporter LplT -
  KI614_RS07720 (KI614_07715) - 1662165..1663067 (+) 903 WP_226409073.1 LysR family transcriptional regulator -
  KI614_RS07725 (KI614_07720) alr 1663064..1664158 (+) 1095 WP_226409075.1 alanine racemase -
  KI614_RS07730 (KI614_07725) radA 1664159..1665517 (+) 1359 WP_203466519.1 DNA repair protein RadA Machinery gene
  KI614_RS07735 (KI614_07730) - 1665557..1668043 (+) 2487 WP_226409077.1 ABC transporter permease -
  KI614_RS07740 (KI614_07735) - 1668109..1668567 (+) 459 WP_226409080.1 FecR domain-containing protein -
  KI614_RS07745 (KI614_07740) - 1668560..1669144 (+) 585 WP_226409082.1 OmpA family protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48344.78 Da        Isoelectric Point: 7.6855

>NTDB_id=568487 KI614_RS07730 WP_203466519.1 1664159..1665517(+) (radA) [Dechloromonas denitrificans strain 98]
MAKAKSIYSCTECGATSPKWQGQCPGCNAWNTLVESVAEKVTGHRFESLAPTARLQNLSEIEARETERIPTGISEFDRAL
GGGLVPGGVVLIGGDPGIGKSTLLLQALAHLAESNKVLYVTGEESGEQVALRARRLSLETRKLTLMAEINLERILSTLQA
ELPQVAVIDSIQTLWSDQLSSAPGSVAQVRECSAQLTRLAKQAGITIILVGHVTKDGALAGPRVLEHIVDTVLYFEGDTH
SSFRLVRAVKNRFGAVNELGVFAMTDKGLKGVNNPSALFLSQHGQDVPGSCVMVTQEGTRPLLVEIQALVDTAHGNPRRL
TVGLDAQRLAMLLAVLHRHAGVVCFDQDVFVNAVGGVKIAEPAADLAVILSITSSLKNKALPSKLIVFGEVGLAGEVRPA
PRGQERLKEAAKLGFTRALIPEANRPKQAIPGMEVIAVRRVEEAVTRLRELD

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=568487 KI614_RS07730 WP_203466519.1 1664159..1665517(+) (radA) [Dechloromonas denitrificans strain 98]
GTGGCCAAGGCGAAGTCGATTTACAGCTGTACCGAATGTGGTGCCACGAGTCCGAAATGGCAAGGCCAGTGTCCTGGCTG
CAATGCATGGAACACCCTGGTCGAGAGCGTGGCCGAGAAGGTGACCGGGCATCGCTTCGAGTCGCTGGCCCCGACGGCCC
GGTTGCAGAATCTTTCAGAGATCGAAGCACGCGAAACCGAACGCATTCCGACCGGAATCAGCGAGTTCGATCGGGCGCTG
GGCGGTGGTCTGGTGCCGGGCGGCGTCGTGCTGATCGGTGGCGATCCGGGCATCGGTAAAAGTACCTTGTTGTTACAGGC
GCTGGCGCACCTGGCCGAGTCGAACAAGGTGCTTTACGTCACCGGCGAGGAGTCCGGCGAGCAGGTTGCCTTGCGGGCCC
GGCGCCTGAGTCTCGAAACCCGGAAACTGACGTTGATGGCCGAGATTAACCTGGAGCGAATTCTGTCCACCCTGCAGGCC
GAGCTACCCCAGGTGGCGGTGATCGATTCGATCCAGACCTTGTGGTCCGATCAATTGTCCAGTGCGCCGGGGTCGGTTGC
TCAGGTGCGCGAGTGTTCCGCACAACTGACCCGGCTGGCCAAGCAGGCCGGCATCACGATCATTCTGGTCGGACATGTGA
CCAAGGACGGGGCGCTGGCCGGGCCGCGCGTGCTCGAACACATCGTCGATACCGTACTGTATTTTGAAGGCGATACACAT
TCGAGTTTCCGCCTGGTCCGGGCCGTCAAGAACCGCTTTGGCGCGGTCAACGAACTCGGGGTTTTTGCCATGACCGACAA
GGGATTGAAAGGCGTGAACAATCCCTCGGCCCTGTTCTTGTCGCAGCATGGTCAGGATGTGCCAGGCTCTTGTGTGATGG
TGACGCAGGAAGGAACGCGACCGTTGCTGGTTGAAATTCAGGCATTGGTCGATACTGCGCATGGCAATCCGCGTCGCCTG
ACTGTCGGGCTGGATGCGCAACGGTTGGCCATGTTGCTGGCGGTGCTGCATCGCCATGCCGGCGTGGTTTGCTTTGATCA
GGATGTCTTCGTCAATGCGGTCGGTGGGGTCAAGATTGCCGAGCCAGCTGCTGATTTGGCGGTGATTTTGTCAATCACAT
CTTCCTTGAAAAACAAAGCATTGCCATCGAAACTTATTGTGTTTGGTGAGGTTGGTCTAGCGGGTGAGGTGCGCCCGGCG
CCGCGTGGCCAGGAGCGTCTCAAGGAGGCTGCCAAGCTTGGCTTTACCCGTGCCTTGATTCCCGAAGCCAATCGCCCGAA
ACAGGCGATTCCCGGTATGGAGGTGATTGCCGTGCGCCGTGTTGAAGAGGCCGTGACGCGGCTGCGCGAGCTTGATTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(355-444)

AAA domain (AAA_25)

(62-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.664

100

0.507
  radA Streptococcus mitis SK321

47.124

100

0.471
  radA Streptococcus pneumoniae D39

46.563

99.779

0.465
  radA Streptococcus pneumoniae TIGR4

46.563

99.779

0.465
  radA Streptococcus mitis NCTC 12261

46.563

99.779

0.465
  radA Streptococcus pneumoniae R6

46.563

99.779

0.465
  radA Streptococcus pneumoniae Rx1

46.563

99.779

0.465