Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KI615_RS12020 Genome accession   NZ_CP075186
Coordinates   2523891..2525249 (-) Length   452 a.a.
NCBI ID   WP_226415134.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain G6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2518891..2530249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI615_RS12010 (KI615_11970) - 2519293..2521779 (-) 2487 WP_226470853.1 ABC transporter permease -
  KI615_RS12015 (KI615_11975) - 2521776..2523863 (-) 2088 WP_226470854.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  KI615_RS12020 (KI615_11980) radA 2523891..2525249 (-) 1359 WP_226415134.1 DNA repair protein RadA Machinery gene
  KI615_RS12025 (KI615_11985) alr 2525250..2526344 (-) 1095 WP_226415138.1 alanine racemase -
  KI615_RS12030 (KI615_11990) - 2526341..2527243 (-) 903 WP_226415141.1 LysR family transcriptional regulator -
  KI615_RS12035 (KI615_11995) lplT 2527524..2528789 (+) 1266 WP_226415144.1 lysophospholipid transporter LplT -
  KI615_RS12040 (KI615_12000) - 2528796..2529566 (-) 771 WP_226415147.1 uracil-DNA glycosylase -
  KI615_RS12045 (KI615_12005) rimI 2529563..2530024 (-) 462 WP_226415172.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48224.65 Da        Isoelectric Point: 7.9551

>NTDB_id=568457 KI615_RS12020 WP_226415134.1 2523891..2525249(-) (radA) [Dechloromonas denitrificans strain G6]
MAKVKSIYSCTECGASSPKWQGQCPGCGEWNTLVESVAEKATGHRFESLAPTAKLQTLSEIEAREVDRVATGIGEFDRAL
GGGLVAGGVVLIGGDPGIGKSTLLLQALAHLSVNHKALYVSGEESGQQVALRARRLSLDTRSLQLMAEINLERILATLQA
EKPQFAVIDSIQTLWSDQLSSAPGSVAQVRECAAQLTRMAKQTGITVLLVGHVTKEGALAGPRVLEHIVDTVLYFEGDTH
SSFRLVRAVKNRFGAVNELGVFAMTDKGLKGVNNPSALFLSQHGQDVAGSCVMVTQEGTRPLLVEIQALVDTAHGNPRRL
TVGLDAQRLAMLLAVLHRHAGIVCFDQDVFVNAVGGVKITEPAADLAVLLSISSSLKNRPLPSKLIVFGEVGLAGEIRPA
PRGQERLKEAAKLGFTRALIPEANRPKQAIAGMEVIAVKRVEEAVARIRELE

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=568457 KI615_RS12020 WP_226415134.1 2523891..2525249(-) (radA) [Dechloromonas denitrificans strain G6]
GTGGCCAAGGTCAAGTCGATATACAGCTGTACCGAATGCGGGGCGAGCAGCCCGAAGTGGCAGGGCCAGTGTCCGGGCTG
CGGCGAGTGGAATACGCTGGTCGAAAGCGTTGCCGAAAAAGCTACCGGCCATCGTTTCGAATCGCTGGCGCCGACCGCCA
AGTTGCAAACGCTGTCGGAAATCGAGGCGCGCGAAGTGGACCGCGTGGCGACCGGCATCGGCGAATTCGACCGGGCGCTG
GGCGGCGGTCTGGTGGCCGGCGGTGTCGTGCTGATCGGCGGCGATCCGGGGATCGGCAAAAGTACCTTGCTGCTGCAGGC
GCTGGCCCATCTCTCGGTCAATCACAAGGCGCTCTACGTCAGCGGCGAGGAATCCGGCCAGCAGGTCGCCCTGCGCGCCC
GCCGGCTGAGCCTCGATACGCGCAGCCTGCAGCTGATGGCCGAGATCAACCTGGAACGTATCCTGGCCACCCTGCAGGCG
GAAAAGCCGCAGTTCGCCGTCATCGACTCGATCCAGACGCTATGGTCGGATCAATTGTCGAGCGCACCGGGATCGGTGGC
CCAGGTCCGCGAATGCGCGGCGCAACTGACGCGGATGGCCAAGCAGACCGGCATCACCGTCCTGCTCGTCGGCCACGTGA
CCAAGGAAGGCGCGCTGGCCGGACCGCGCGTGCTCGAACATATCGTCGATACCGTGCTCTATTTCGAGGGCGACACCCAC
TCCAGCTTCCGCCTGGTGCGGGCGGTCAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGCGTCTTTGCGATGACCGACAA
GGGGCTGAAGGGGGTCAACAACCCGTCGGCCTTGTTCCTGTCGCAGCATGGGCAGGATGTTGCCGGTTCCTGCGTGATGG
TCACCCAGGAAGGAACCCGCCCGTTGCTGGTGGAAATCCAGGCGCTGGTCGATACTGCCCACGGCAATCCGCGCCGCCTC
ACCGTCGGCTTGGATGCCCAGCGTCTGGCGATGTTGCTGGCGGTGCTGCATCGCCATGCCGGTATCGTCTGTTTCGATCA
GGATGTCTTCGTCAATGCCGTCGGTGGCGTCAAGATTACCGAGCCGGCAGCCGATCTGGCCGTGCTGCTGTCGATAAGCT
CGTCGCTGAAAAACAGGCCGTTGCCGTCAAAGCTGATCGTCTTCGGCGAGGTTGGCCTGGCTGGCGAGATCCGGCCGGCG
CCGCGCGGCCAGGAGCGCCTGAAGGAGGCGGCCAAGCTTGGCTTTACCCGCGCCCTGATCCCGGAAGCCAACCGGCCGAA
GCAGGCCATCGCCGGCATGGAGGTGATTGCCGTCAAGCGCGTCGAGGAGGCGGTGGCGCGGATCAGGGAGTTGGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(61-217)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(355-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.535

100

0.52
  radA Streptococcus mitis SK321

47.807

100

0.482
  radA Streptococcus pneumoniae D39

47.912

100

0.482
  radA Streptococcus pneumoniae TIGR4

47.912

100

0.482
  radA Streptococcus pneumoniae R6

47.912

100

0.482
  radA Streptococcus pneumoniae Rx1

47.912

100

0.482
  radA Streptococcus mitis NCTC 12261

47.692

100

0.48