Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KI615_RS02980 Genome accession   NZ_CP075186
Coordinates   592158..593120 (+) Length   320 a.a.
NCBI ID   WP_226418324.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain G6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 587158..598120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI615_RS02955 (KI615_02950) - 588046..588303 (-) 258 WP_066887419.1 YfhL family 4Fe-4S dicluster ferredoxin -
  KI615_RS02960 (KI615_02955) coaD 588321..588815 (-) 495 WP_226418320.1 pantetheine-phosphate adenylyltransferase -
  KI615_RS02965 (KI615_02960) rsmD 588812..589354 (-) 543 WP_226472215.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KI615_RS02970 (KI615_02965) - 589351..590640 (-) 1290 WP_226472216.1 M16 family metallopeptidase -
  KI615_RS02975 (KI615_02970) - 590679..592031 (-) 1353 WP_226472217.1 M16 family metallopeptidase -
  KI615_RS02980 (KI615_02975) pilA 592158..593120 (+) 963 WP_226418324.1 signal recognition particle-docking protein FtsY Machinery gene
  KI615_RS02985 (KI615_02980) ftsE 593117..593767 (+) 651 WP_226418325.1 cell division ATP-binding protein FtsE -
  KI615_RS02990 (KI615_02985) ftsX 593764..594663 (+) 900 WP_226418326.1 permease-like cell division protein FtsX -
  KI615_RS02995 (KI615_02990) - 594656..596287 (+) 1632 WP_226418327.1 NAD(P)/FAD-dependent oxidoreductase -
  KI615_RS03000 (KI615_02995) - 596541..597212 (+) 672 WP_226472218.1 M48 family metalloprotease -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34652.86 Da        Isoelectric Point: 6.9774

>NTDB_id=568455 KI615_RS02980 WP_226418324.1 592158..593120(+) (pilA) [Dechloromonas denitrificans strain G6]
MFSFLKKSAPETKVEAPAAPSWRERLFKGLAKTRAQWGGKLKSIFSRGKVDDELLEELETLLLTSDCGIEATTHLLDELK
KAAKRDKLDTPEGIQQALANALLETLQPLEQALDVSGHKPYVIMIAGVNGAGKTTSIGKLAKYFQDQGKSVLLAAGDTFR
AAAREQLETWGERNNITVIAQDNGDPAAVVFDAISAAKARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIQKIDPSGPHE
TLLVLDANIGQNALQQVRAFDKAIHVTGLVLTKLDGTAKGGVVTAIARQCPKPIRFIGVGEQIDDLRPFSAKDFVDALFE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=568455 KI615_RS02980 WP_226418324.1 592158..593120(+) (pilA) [Dechloromonas denitrificans strain G6]
ATGTTCAGTTTCCTGAAAAAATCCGCGCCTGAAACCAAGGTCGAAGCCCCGGCCGCCCCGTCCTGGCGCGAACGCCTCTT
CAAGGGGCTGGCCAAGACCCGCGCCCAGTGGGGCGGCAAGCTCAAATCCATCTTCTCGCGCGGCAAGGTCGACGACGAAC
TGCTCGAAGAGCTGGAAACGCTGTTGCTGACCAGCGATTGCGGCATCGAGGCAACCACCCATCTGCTCGACGAGTTGAAA
AAAGCCGCCAAGCGCGACAAGCTCGATACGCCGGAAGGCATCCAGCAGGCGCTGGCCAACGCCCTGCTCGAAACCCTGCA
GCCGCTTGAACAGGCGCTCGACGTCAGCGGCCACAAGCCCTACGTGATCATGATTGCCGGGGTTAACGGTGCCGGCAAGA
CGACTTCGATCGGCAAGCTGGCCAAGTATTTCCAGGACCAGGGCAAGAGCGTGCTGCTCGCCGCTGGCGACACCTTCCGC
GCCGCCGCCCGCGAACAGCTGGAAACCTGGGGTGAGCGCAACAACATCACGGTCATTGCCCAGGACAACGGCGATCCGGC
GGCTGTGGTCTTCGACGCTATTTCCGCCGCTAAGGCGCGCGGTATCGACATCGTGCTGGCCGACACCGCCGGCCGTCTGC
CGACCCAGTTGCACCTGATGGAAGAGATCGCCAAAGTCCGGCGGGTGATCCAGAAGATCGATCCGAGCGGCCCGCACGAA
ACGCTGCTCGTGCTCGATGCCAATATCGGCCAGAACGCGCTGCAGCAGGTCCGGGCCTTCGACAAGGCGATCCATGTCAC
CGGTTTGGTTCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCGTCGTCACGGCGATCGCCCGGCAGTGTCCGAAACCGA
TCCGCTTCATCGGCGTCGGCGAGCAGATCGACGATCTGCGCCCGTTCTCCGCCAAAGATTTCGTCGACGCGCTATTCGAA
TGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(121-319)

SRP54-type protein, helical bundle domain (SRP54_N)

(38-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

62

93.75

0.581