Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MK848_RS17185 Genome accession   NZ_CP092824
Coordinates   3355319..3356449 (+) Length   376 a.a.
NCBI ID   WP_029317429.1    Uniprot ID   -
Organism   Bacillus subtilis strain S1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3350319..3361449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS17165 (MK848_17135) - 3350645..3351040 (-) 396 WP_029317425.1 immunity 22 family protein -
  MK848_RS17170 (MK848_17140) - 3351053..3352939 (-) 1887 WP_029317426.1 ribonuclease YeeF family protein -
  MK848_RS17175 (MK848_17145) - 3353152..3354168 (+) 1017 WP_029317427.1 hypothetical protein -
  MK848_RS17180 (MK848_17150) - 3354297..3355154 (+) 858 WP_029317428.1 hypothetical protein -
  MK848_RS17185 (MK848_17155) rapC 3355319..3356449 (+) 1131 WP_029317429.1 response regulator aspartate phosphatase RapH Regulator
  MK848_RS17190 (MK848_17160) phrH 3356439..3356612 (+) 174 WP_029317430.1 phosphatase RapH inhibitor PhrH -
  MK848_RS17195 (MK848_17165) yeeI 3356772..3357491 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  MK848_RS17200 (MK848_17170) yeeK 3357625..3358062 (+) 438 WP_003244206.1 spore coat protein YeeK -
  MK848_RS17205 (MK848_17175) yezE 3358177..3358761 (+) 585 WP_003243181.1 TetR/AcrR family transcriptional regulator -
  MK848_RS17210 (MK848_17180) yesE 3358840..3359283 (+) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  MK848_RS17215 (MK848_17185) yesF 3359280..3360148 (+) 869 Protein_3342 NAD-dependent epimerase/dehydratase family protein -
  MK848_RS17220 (MK848_17190) cotJA 3360274..3360522 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  MK848_RS17225 (MK848_17195) cotJB 3360506..3360769 (+) 264 WP_003219491.1 spore coat protein CotJB -
  MK848_RS17230 (MK848_17200) cotJC 3360784..3361353 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43998.26 Da        Isoelectric Point: 5.5861

>NTDB_id=568437 MK848_RS17185 WP_029317429.1 3355319..3356449(+) (rapC) [Bacillus subtilis strain S1]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQNNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLETALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=568437 MK848_RS17185 WP_029317429.1 3355319..3356449(+) (rapC) [Bacillus subtilis strain S1]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCTTTAGACATTTATCAAAACAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
TGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGACGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

39.788

100

0.399