Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MK848_RS17155 Genome accession   NZ_CP092824
Coordinates   3348942..3350069 (-) Length   375 a.a.
NCBI ID   WP_029317423.1    Uniprot ID   -
Organism   Bacillus subtilis strain S1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3343942..3355069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS17135 (MK848_17105) - 3344014..3344406 (-) 393 WP_080265325.1 recombinase family protein -
  MK848_RS17140 (MK848_17110) - 3344867..3345076 (-) 210 WP_014479083.1 hypothetical protein -
  MK848_RS17145 (MK848_17115) - 3345309..3348326 (+) 3018 WP_029317421.1 SIR2 family protein -
  MK848_RS17150 (MK848_17120) - 3348755..3348952 (-) 198 WP_029317422.1 hypothetical protein -
  MK848_RS17155 (MK848_17125) rapC 3348942..3350069 (-) 1128 WP_029317423.1 Rap family tetratricopeptide repeat protein Regulator
  MK848_RS17160 (MK848_17130) - 3350259..3350561 (-) 303 WP_029317424.1 hypothetical protein -
  MK848_RS17165 (MK848_17135) - 3350645..3351040 (-) 396 WP_029317425.1 immunity 22 family protein -
  MK848_RS17170 (MK848_17140) - 3351053..3352939 (-) 1887 WP_029317426.1 ribonuclease YeeF family protein -
  MK848_RS17175 (MK848_17145) - 3353152..3354168 (+) 1017 WP_029317427.1 hypothetical protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44294.99 Da        Isoelectric Point: 6.9584

>NTDB_id=568436 MK848_RS17155 WP_029317423.1 3348942..3350069(-) (rapC) [Bacillus subtilis strain S1]
MGTISSPHVGMKINEWNRHIQKFNVTDAELLKAEIERDIDVMEEDQDLLIYYQLIAFRHQLMIDYVIPSEGNQMKLSEYL
KRIEGSNRKMEKLVEYYYYFFQGMYEFKEGNFLSAITFYQKAENTIPYISDEIERAEFYFKMAEVFYHMKQTHVSMHYSS
QAYNIYKTHDLYSVRRIQCHFVIAGNYDDLESHEKALPHLEQALKGARLLESKNKRIYGQALFNIGNCYLKMGELTKAAK
YMEQSILQFKKSNFNNLTQAYHDLALIYFLQHKQDQAMDCFRKGVRFACKFDDGLFKIMFEGLQALFVKKGEASILLNVF
NKLETSQGYPYMEELALLAAKFYTEIGQMDDSVICFKKMVHARKQIQRGDCLYEI

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=568436 MK848_RS17155 WP_029317423.1 3348942..3350069(-) (rapC) [Bacillus subtilis strain S1]
TTGGGCACGATTTCGTCTCCGCACGTTGGGATGAAAATTAATGAGTGGAACCGGCATATTCAAAAGTTTAATGTGACTGA
CGCTGAATTGCTTAAAGCTGAGATTGAGCGGGACATTGACGTCATGGAAGAAGACCAAGACCTCTTGATTTACTATCAGC
TCATTGCATTTCGCCATCAGCTTATGATTGACTATGTGATTCCATCTGAAGGAAACCAAATGAAGTTATCAGAATATTTA
AAGAGAATTGAAGGCAGCAACAGGAAGATGGAGAAGCTCGTTGAATACTACTATTACTTTTTTCAAGGAATGTATGAATT
CAAAGAGGGCAATTTCTTAAGTGCCATTACATTCTATCAAAAAGCGGAAAATACAATTCCTTATATTTCAGATGAAATCG
AGCGGGCAGAATTTTATTTTAAAATGGCTGAAGTGTTTTATCATATGAAACAAACCCATGTATCCATGCACTATTCTTCT
CAGGCGTATAACATTTATAAAACGCACGACCTTTACTCAGTCCGCCGCATACAATGCCATTTTGTGATCGCAGGAAACTA
CGATGACCTAGAAAGTCATGAAAAGGCGCTCCCTCACCTCGAACAGGCACTAAAAGGCGCACGGCTGCTTGAAAGCAAAA
ACAAGCGAATTTACGGCCAAGCTTTATTCAATATCGGAAATTGTTATCTTAAAATGGGCGAATTGACGAAAGCAGCAAAA
TACATGGAGCAATCGATACTCCAATTCAAAAAATCAAATTTCAACAACTTGACACAAGCTTACCACGATTTAGCCTTAAT
TTATTTTCTTCAACATAAACAAGACCAAGCAATGGATTGTTTCAGAAAAGGCGTACGCTTCGCATGTAAATTCGACGATG
GCCTATTTAAAATTATGTTTGAAGGATTACAGGCGCTGTTTGTCAAAAAAGGAGAAGCGTCCATTTTATTAAATGTTTTC
AACAAATTAGAGACATCCCAAGGATATCCTTATATGGAAGAGTTGGCATTATTAGCCGCAAAGTTTTATACTGAAATTGG
GCAGATGGATGATTCTGTTATCTGTTTCAAAAAGATGGTTCATGCCCGCAAACAAATTCAGAGAGGGGATTGTTTGTATG
AAATTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(3-64)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.421
  rapF Bacillus subtilis subsp. subtilis str. 168

39.05

100

0.395