Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   MK848_RS15870 Genome accession   NZ_CP092824
Coordinates   3103873..3104307 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3098873..3109307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS15840 (MK848_15825) ydaD 3099523..3100383 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  MK848_RS15845 (MK848_15830) lyxE 3100399..3100902 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  MK848_RS15850 (MK848_15835) ydaF 3100988..3101539 (+) 552 WP_003246691.1 GNAT family N-acetyltransferase -
  MK848_RS15855 (MK848_15840) ydaG 3101617..3102039 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  MK848_RS15860 (MK848_15845) amj 3102545..3103354 (+) 810 WP_003234394.1 lipid II flippase Amj -
  MK848_RS15865 (MK848_15850) ydzA 3103398..3103688 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  MK848_RS15870 (MK848_15855) lrpC 3103873..3104307 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  MK848_RS15875 (MK848_15860) topB 3104372..3106555 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  MK848_RS15880 (MK848_15865) ephJ 3106758..3107846 (+) 1089 WP_217011607.1 lipoprotein YdaJ -
  MK848_RS15885 (MK848_15870) epsK 3107827..3108678 (+) 852 WP_003234384.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=568433 MK848_RS15870 WP_003246585.1 3103873..3104307(+) (lrpC) [Bacillus subtilis strain S1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=568433 MK848_RS15870 WP_003246585.1 3103873..3104307(+) (lrpC) [Bacillus subtilis strain S1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1