Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   KI611_RS02860 Genome accession   NZ_CP075185
Coordinates   570057..571019 (+) Length   320 a.a.
NCBI ID   WP_226418324.1    Uniprot ID   -
Organism   Dechloromonas denitrificans strain 110     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 565057..576019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI611_RS02835 (KI611_02810) - 565945..566202 (-) 258 WP_066887419.1 YfhL family 4Fe-4S dicluster ferredoxin -
  KI611_RS02840 (KI611_02815) coaD 566220..566714 (-) 495 WP_226418320.1 pantetheine-phosphate adenylyltransferase -
  KI611_RS02845 (KI611_02820) rsmD 566711..567253 (-) 543 WP_226418321.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KI611_RS02850 (KI611_02825) - 567250..568539 (-) 1290 WP_226418322.1 M16 family metallopeptidase -
  KI611_RS02855 (KI611_02830) - 568578..569930 (-) 1353 WP_226418323.1 M16 family metallopeptidase -
  KI611_RS02860 (KI611_02835) pilA 570057..571019 (+) 963 WP_226418324.1 signal recognition particle-docking protein FtsY Machinery gene
  KI611_RS02865 (KI611_02840) ftsE 571016..571666 (+) 651 WP_226418325.1 cell division ATP-binding protein FtsE -
  KI611_RS02870 (KI611_02845) ftsX 571663..572562 (+) 900 WP_226418326.1 permease-like cell division protein FtsX -
  KI611_RS02875 (KI611_02850) - 572555..574186 (+) 1632 WP_226418327.1 NAD(P)/FAD-dependent oxidoreductase -
  KI611_RS02880 (KI611_02855) - 574440..575111 (+) 672 WP_226418328.1 M48 family metalloprotease -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34652.86 Da        Isoelectric Point: 6.9774

>NTDB_id=568431 KI611_RS02860 WP_226418324.1 570057..571019(+) (pilA) [Dechloromonas denitrificans strain 110]
MFSFLKKSAPETKVEAPAAPSWRERLFKGLAKTRAQWGGKLKSIFSRGKVDDELLEELETLLLTSDCGIEATTHLLDELK
KAAKRDKLDTPEGIQQALANALLETLQPLEQALDVSGHKPYVIMIAGVNGAGKTTSIGKLAKYFQDQGKSVLLAAGDTFR
AAAREQLETWGERNNITVIAQDNGDPAAVVFDAISAAKARGIDIVLADTAGRLPTQLHLMEEIAKVRRVIQKIDPSGPHE
TLLVLDANIGQNALQQVRAFDKAIHVTGLVLTKLDGTAKGGVVTAIARQCPKPIRFIGVGEQIDDLRPFSAKDFVDALFE

Nucleotide


Download         Length: 963 bp        

>NTDB_id=568431 KI611_RS02860 WP_226418324.1 570057..571019(+) (pilA) [Dechloromonas denitrificans strain 110]
ATGTTCAGTTTCCTGAAAAAATCCGCGCCTGAAACCAAGGTCGAAGCCCCGGCCGCCCCGTCCTGGCGCGAACGCCTCTT
CAAGGGGCTGGCCAAGACCCGCGCCCAGTGGGGCGGCAAGCTCAAATCCATCTTCTCGCGCGGCAAGGTCGACGACGAAC
TGCTCGAAGAGCTGGAAACGCTGTTGCTGACCAGCGATTGCGGCATCGAGGCAACCACCCATCTGCTCGACGAGTTGAAA
AAAGCCGCCAAGCGCGACAAGCTCGATACGCCGGAAGGCATCCAGCAGGCGCTGGCCAACGCCCTGCTCGAAACCCTGCA
GCCGCTTGAACAGGCGCTCGACGTCAGCGGCCACAAGCCCTACGTGATCATGATTGCCGGGGTTAACGGTGCCGGCAAGA
CGACTTCGATCGGCAAGCTGGCCAAGTATTTCCAGGACCAGGGCAAGAGCGTGCTGCTCGCCGCTGGCGACACCTTCCGC
GCCGCCGCCCGCGAACAGCTGGAAACCTGGGGTGAGCGCAACAACATCACGGTCATTGCCCAGGACAACGGCGATCCGGC
GGCTGTGGTCTTCGACGCTATTTCCGCCGCTAAGGCGCGCGGTATCGACATCGTGCTGGCCGACACCGCCGGCCGTCTGC
CGACCCAGTTGCACCTGATGGAAGAGATCGCCAAAGTCCGGCGGGTGATCCAGAAGATCGATCCGAGCGGCCCGCACGAA
ACGCTGCTCGTGCTCGATGCCAATATCGGCCAGAACGCGCTGCAGCAGGTCCGGGCCTTCGACAAGGCGATCCATGTCAC
CGGTTTGGTTCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCGTCGTCACGGCGATCGCCCGGCAGTGTCCGAAACCGA
TCCGCTTCATCGGCGTCGGCGAGCAGATCGACGATCTGCGCCCGTTCTCCGCCAAAGATTTCGTCGACGCGCTATTCGAA
TGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(121-319)

SRP54-type protein, helical bundle domain (SRP54_N)

(38-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

62

93.75

0.581