Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   KI609_RS20995 Genome accession   NZ_CP075184
Coordinates   4577838..4579433 (-) Length   531 a.a.
NCBI ID   WP_226445464.1    Uniprot ID   -
Organism   Acidovorax radicis strain 79     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4572838..4584433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI609_RS20975 (KI609_20915) - 4573640..4575382 (+) 1743 WP_226450558.1 ABC transporter ATP-binding protein/permease -
  KI609_RS20980 (KI609_20920) - 4575415..4575906 (-) 492 WP_226445461.1 putative toxin-antitoxin system toxin component, PIN family -
  KI609_RS20985 (KI609_20925) - 4575896..4577215 (-) 1320 WP_226445462.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  KI609_RS20990 (KI609_20930) - 4577245..4577703 (-) 459 WP_226445463.1 acyl-CoA thioesterase -
  KI609_RS20995 (KI609_20935) rpoN/rpoN1 4577838..4579433 (-) 1596 WP_226445464.1 RNA polymerase factor sigma-54 Machinery gene
  KI609_RS21000 (KI609_20940) lptB 4579450..4580232 (-) 783 WP_226445465.1 LPS export ABC transporter ATP-binding protein -
  KI609_RS21005 (KI609_20945) lptA 4580229..4580888 (-) 660 WP_226445466.1 lipopolysaccharide transport periplasmic protein LptA -
  KI609_RS21010 (KI609_20950) - 4581186..4581842 (-) 657 WP_226445467.1 thiol:disulfide interchange protein DsbA/DsbL -
  KI609_RS21015 (KI609_20955) - 4581977..4582633 (-) 657 WP_226445468.1 SPOR domain-containing protein -
  KI609_RS21020 (KI609_20960) argS 4582649..4584358 (-) 1710 WP_226445469.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58420.51 Da        Isoelectric Point: 4.6819

>NTDB_id=568426 KI609_RS20995 WP_226445464.1 4577838..4579433(-) (rpoN/rpoN1) [Acidovorax radicis strain 79]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLDRTDEEAPREEFGLDAADTPAQADDYSADDALY
LGAASAITTSAEGQNDAESSGGGAEEPDWNGDGTVEMAPNDAEWGGDAPARNRNDSEGDEADATELARSHESLTAFLHRQ
ALALRLSEIDRAALRFLIESLTDDGYLEDSLEELAISLAGPDDLAQIEELVHRFTVAQRLLQSLEPTGVGARNLAECLTL
QLNALARGEDGDGDADPDTVQTALRICQQPLEMLARRDIRRLTQLCGDGEERTRAAMALIARLEPRPGRRFVDVERNIIV
PDVIVRKAGRANGRDGQHNFIVSLNPDVMPRLRVHDIYAGALRGHKGGEGHQGMQQRLQEARWFIKNIQQRFDTILRVSR
AIVERQKNFFTHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPIGTYELKYFFGSGLGTETGGNASSTAVRALIK
QFVAAESPTKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=568426 KI609_RS20995 WP_226445464.1 4577838..4579433(-) (rpoN/rpoN1) [Acidovorax radicis strain 79]
ATGAAGCCTGGTCTCTCGCTGCGCGTTTCGCAGCACCTTGCACTGACACCCCAGCTCCAGCAGTCCATTCGGCTGCTGCA
GTTGTCCACGCTTGAACTGTCGCAAGAGGTCGAGCAGATGCTCGACGAAAACCCCTTTCTGGACCGCACGGACGAAGAGG
CACCGCGCGAAGAGTTTGGCCTGGACGCGGCCGACACGCCTGCGCAGGCCGACGACTACAGCGCCGATGATGCTCTTTAT
TTAGGAGCTGCTAGCGCAATCACCACAAGCGCTGAGGGCCAAAATGATGCTGAATCTTCAGGCGGCGGCGCTGAAGAACC
CGACTGGAACGGCGACGGCACCGTGGAAATGGCTCCCAACGACGCCGAATGGGGCGGCGATGCGCCCGCCCGCAATCGCA
ACGACTCCGAAGGCGACGAGGCCGACGCCACCGAGCTGGCCCGCTCACACGAGTCGCTGACGGCCTTCTTGCATCGCCAG
GCGCTGGCGCTGCGCCTGTCCGAGATCGACCGCGCCGCGCTGAGGTTTCTCATCGAGTCGCTCACCGACGACGGCTATCT
TGAAGATTCACTCGAAGAGCTCGCCATCAGCCTGGCCGGTCCCGATGATCTGGCACAGATCGAAGAGCTGGTGCACCGAT
TTACCGTGGCCCAGCGCCTGCTGCAAAGCCTCGAACCCACGGGGGTGGGCGCTCGCAACCTCGCCGAATGCCTCACGCTG
CAGCTCAACGCATTGGCCCGCGGAGAAGACGGCGACGGTGATGCCGACCCCGACACCGTGCAGACCGCGCTGCGCATCTG
CCAGCAGCCGCTGGAGATGCTGGCCCGCCGCGACATCCGCCGCCTCACCCAGCTGTGTGGCGATGGCGAGGAGCGCACAC
GCGCCGCCATGGCCCTGATCGCGCGGCTGGAGCCCCGCCCCGGGCGCAGGTTCGTGGATGTGGAGCGCAACATCATCGTG
CCCGACGTCATTGTGCGCAAAGCCGGGCGTGCCAATGGGCGCGATGGTCAGCACAACTTCATCGTCAGCCTCAACCCCGA
CGTAATGCCGCGCCTGCGCGTGCACGACATCTACGCTGGCGCCCTGCGCGGCCACAAGGGCGGCGAGGGCCATCAGGGCA
TGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTTGACACCATCTTGCGTGTGTCGCGC
GCGATCGTCGAGCGGCAAAAGAACTTTTTCACCCACGGTGAGCTGGCCATGCGCCCCCTGGTGCTGCGCGACATTGCCGA
TGAGTTGGGCCTGCACGAATCCACCATCAGCCGCGTCACCACCGCCAAATACATGGCCACGCCGATTGGCACCTACGAGC
TGAAATATTTCTTCGGATCGGGCCTGGGCACCGAGACCGGTGGCAATGCATCGAGCACCGCCGTGCGCGCGCTCATCAAG
CAGTTCGTGGCGGCCGAGAGCCCCACCAAACCATTGTCCGACAGCCAGATCGCCGAAATGCTCAAGGAGCAGGGCATTGA
ATGCGCGCGCCGCACCGTGGCCAAATACCGCGAGGCGCTCAAAATTGCGCCAGCCAATCTGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(144-358)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(374-529)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.142

100

0.527