Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   KI616_RS24520 Genome accession   NZ_CP075183
Coordinates   5177891..5179543 (-) Length   550 a.a.
NCBI ID   WP_226463785.1    Uniprot ID   -
Organism   Hydrogenophaga taeniospiralis strain LT2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5172891..5184543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KI616_RS24485 (KI616_24420) - 5173418..5173723 (-) 306 WP_226463778.1 alpha/beta fold hydrolase -
  KI616_RS24490 (KI616_24425) - 5173886..5174740 (-) 855 WP_226463779.1 SDR family oxidoreductase -
  KI616_RS24495 (KI616_24430) - 5174829..5175290 (+) 462 WP_226463780.1 winged helix-turn-helix transcriptional regulator -
  KI616_RS24500 (KI616_24435) - 5175340..5175558 (+) 219 WP_226463781.1 hypothetical protein -
  KI616_RS24505 (KI616_24440) - 5175568..5175960 (-) 393 WP_226463782.1 glutaredoxin family protein -
  KI616_RS24510 (KI616_24445) - 5175957..5176412 (-) 456 WP_226463783.1 putative toxin-antitoxin system toxin component, PIN family -
  KI616_RS24515 (KI616_24450) - 5176409..5177743 (-) 1335 WP_226463784.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  KI616_RS24520 (KI616_24455) rpoN/rpoN1 5177891..5179543 (-) 1653 WP_226463785.1 RNA polymerase factor sigma-54 Machinery gene
  KI616_RS24525 (KI616_24460) lptB 5179656..5180432 (-) 777 WP_413466222.1 LPS export ABC transporter ATP-binding protein -
  KI616_RS24530 (KI616_24465) lptA 5180438..5181073 (-) 636 WP_226463786.1 lipopolysaccharide transport periplasmic protein LptA -
  KI616_RS24535 (KI616_24470) - 5181213..5181851 (-) 639 WP_226463787.1 thiol:disulfide interchange protein DsbA/DsbL -
  KI616_RS24540 (KI616_24475) - 5181924..5182607 (-) 684 WP_226463788.1 SPOR domain-containing protein -
  KI616_RS24545 (KI616_24480) argS 5182622..5184295 (-) 1674 WP_226463789.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 550 a.a.        Molecular weight: 60441.01 Da        Isoelectric Point: 4.5675

>NTDB_id=568408 KI616_RS24520 WP_226463785.1 5177891..5179543(-) (rpoN/rpoN1) [Hydrogenophaga taeniospiralis strain LT2]
MKQGLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLERTEEIAEREAFGLDQVDAPVSAGEQIAEAALP
VADAVAAPAEYDGPLPDRVSSSSDAPADSGSGDEIESRLDGATPVEESWEGDGTVEMAPDDSEWGGDAPARNSGSGGDDD
ETASAADLARSPVSLQDHLHEQARCLRLSDEDQAALYFLIESLNDDAYLEDDLAELALGFWRLMHGREAASPGIEELEAA
EAQLRMALGWLQHMEPTGVGARNLGECLRLQIEELRNSPEARAALAICHQSMELVAKRDIKRLCALCGIDDETARAALAI
IARLEPKPGRRFIDVERNVVVPDVIVTRAGRGFKVILNPDVMPRLRVHDVYANAMRQNRGGRDNGGEAGHAAMQQRLQEA
RWFIKNIQQRFDTILRVSSAIVERQRNFFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTYELKYFFGSS
LGTETGGNASSTAVRALLKQFIASEEPKKPLSDNQLSDLLKEQGIECARRTVAKYREALRIAPANLRKAL

Nucleotide


Download         Length: 1653 bp        

>NTDB_id=568408 KI616_RS24520 WP_226463785.1 5177891..5179543(-) (rpoN/rpoN1) [Hydrogenophaga taeniospiralis strain LT2]
ATGAAACAAGGCCTGTCCCTGCGTGTTTCGCAGCACCTGGCGCTCACGCCCCAGTTGCAGCAGTCGATCCGGCTGCTGCA
ACTCTCCACGCTGGAGATGGCGCAGGAGGTCGAGCAGATGCTCGACGAAAACCCGTTTCTGGAGCGCACCGAAGAGATCG
CCGAGCGCGAGGCGTTTGGTCTGGATCAGGTTGATGCGCCGGTGAGCGCGGGTGAACAGATCGCTGAAGCCGCGCTGCCG
GTGGCCGACGCCGTGGCCGCGCCGGCCGAATACGACGGCCCGCTGCCCGACCGCGTCAGCAGTTCGTCCGACGCGCCCGC
TGACAGCGGCTCTGGCGACGAGATTGAGAGCCGGCTCGACGGCGCCACCCCGGTGGAAGAAAGCTGGGAAGGCGACGGCA
CGGTCGAGATGGCGCCCGACGACAGCGAATGGGGCGGTGACGCACCCGCGCGAAACAGCGGCTCGGGCGGTGACGACGAC
GAAACCGCCAGCGCAGCCGACCTGGCCCGCAGTCCCGTCAGTCTGCAGGACCACCTGCACGAGCAGGCCCGCTGCCTGCG
ACTGAGCGACGAAGACCAGGCCGCACTGTATTTCCTGATCGAGTCGCTCAACGACGACGCCTACCTGGAAGACGACCTGG
CCGAGCTCGCCCTGGGCTTCTGGCGGCTCATGCACGGCCGCGAGGCGGCTTCACCCGGGATCGAAGAGCTGGAGGCCGCT
GAAGCCCAGCTGCGCATGGCCCTGGGCTGGCTGCAGCACATGGAGCCCACTGGTGTGGGTGCGCGCAACCTCGGCGAATG
CCTGCGGTTGCAGATCGAAGAGCTGCGCAACTCCCCCGAAGCGCGCGCAGCGCTGGCCATCTGCCACCAGTCCATGGAAC
TGGTGGCCAAACGCGACATCAAGCGCCTGTGTGCCCTGTGCGGCATCGACGATGAAACCGCCCGAGCCGCGCTGGCGATC
ATCGCCCGGCTGGAACCCAAACCCGGGCGCCGCTTCATCGATGTCGAGCGCAACGTGGTCGTGCCCGACGTCATCGTCAC
GCGCGCCGGCCGGGGTTTCAAGGTCATCCTGAATCCCGACGTGATGCCGCGCCTGCGCGTGCACGACGTCTACGCCAACG
CCATGAGGCAAAACCGCGGCGGTCGGGACAACGGCGGCGAAGCCGGCCACGCCGCCATGCAGCAACGGCTGCAGGAAGCG
CGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCCTGCGTGTGTCCTCGGCCATCGTCGAGCGCCAGCGCAA
TTTCTTCATGCACGGCGAACTCGCCATGCGACCGCTGGTGCTGCGCGAGATCGCCGACGAACTCGGCCTGCACGAGTCCA
CCATCAGCCGCGTGACCACCGCCAAGTACATGGCCACGCCGTTCGGCACCTACGAACTCAAGTATTTCTTCGGCTCCTCG
CTCGGCACCGAAACCGGGGGCAACGCGTCCAGCACCGCGGTGCGCGCCCTGCTCAAGCAGTTCATCGCCTCCGAAGAGCC
CAAGAAGCCGCTGTCCGACAACCAGCTCTCCGACCTGCTCAAGGAGCAGGGCATCGAATGCGCGCGCCGCACTGTGGCCA
AGTACCGCGAGGCGCTGCGCATCGCGCCGGCCAATTTGCGCAAAGCGCTGTGA

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(392-548)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(167-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.732

100

0.505