Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | NJAUSS_RS09480 | Genome accession | NC_020526 |
| Coordinates | 1921053..1923506 (-) | Length | 817 a.a. |
| NCBI ID | WP_014636516.1 | Uniprot ID | - |
| Organism | Streptococcus suis SC070731 | ||
| Function | degradation of ComW (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1917155..1960382 | 1921053..1923506 | within | 0 |
Gene organization within MGE regions
Location: 1917155..1960382
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NJAUSS_RS09460 (NJAUSS_1815) | dusB | 1917155..1918159 (+) | 1005 | WP_012775355.1 | tRNA dihydrouridine synthase DusB | - |
| NJAUSS_RS09465 (NJAUSS_1816) | - | 1918305..1919078 (-) | 774 | WP_012027854.1 | NUDIX domain-containing protein | - |
| NJAUSS_RS09470 (NJAUSS_1817) | pnuC | 1919071..1919892 (-) | 822 | WP_012027855.1 | nicotinamide riboside transporter PnuC | - |
| NJAUSS_RS09475 (NJAUSS_1818) | - | 1919902..1920939 (-) | 1038 | WP_012028524.1 | AAA family ATPase | - |
| NJAUSS_RS09480 (NJAUSS_1819) | clpC | 1921053..1923506 (-) | 2454 | WP_014636516.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| NJAUSS_RS09485 (NJAUSS_1820) | - | 1923512..1923970 (-) | 459 | WP_012027859.1 | CtsR family transcriptional regulator | - |
| NJAUSS_RS09490 (NJAUSS_1821) | - | 1924120..1924458 (+) | 339 | WP_012027860.1 | thioredoxin domain-containing protein | - |
| NJAUSS_RS09495 (NJAUSS_1822) | - | 1924458..1925108 (+) | 651 | WP_015445352.1 | hypothetical protein | - |
| NJAUSS_RS09500 (NJAUSS_1823) | tsf | 1925422..1926462 (-) | 1041 | WP_012027862.1 | translation elongation factor Ts | - |
| NJAUSS_RS09505 (NJAUSS_1824) | rpsB | 1926618..1927394 (-) | 777 | WP_012775356.1 | 30S ribosomal protein S2 | - |
| NJAUSS_RS09510 (NJAUSS_1825) | - | 1927741..1928253 (-) | 513 | WP_012775452.1 | adenylate kinase | - |
| NJAUSS_RS09520 (NJAUSS_1827) | - | 1928907..1933985 (-) | 5079 | WP_012775357.1 | S8 family serine peptidase | - |
| NJAUSS_RS09525 (NJAUSS_1828) | nusG | 1934129..1934668 (-) | 540 | WP_002940254.1 | transcription termination/antitermination protein NusG | - |
| NJAUSS_RS09530 (NJAUSS_1829) | secE | 1934778..1934954 (-) | 177 | WP_002940255.1 | preprotein translocase subunit SecE | - |
| NJAUSS_RS09535 (NJAUSS_1830) | rpmG | 1934964..1935116 (-) | 153 | WP_002940258.1 | 50S ribosomal protein L33 | - |
| NJAUSS_RS09540 (NJAUSS_1831) | pbp2a | 1935150..1937363 (-) | 2214 | WP_012027868.1 | penicillin-binding protein PBP2A | - |
| NJAUSS_RS09545 (NJAUSS_1832) | - | 1937516..1938484 (+) | 969 | WP_012027869.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| NJAUSS_RS09550 (NJAUSS_1833) | - | 1938486..1939352 (+) | 867 | WP_012027870.1 | RluA family pseudouridine synthase | - |
| NJAUSS_RS09555 (NJAUSS_1834) | purR | 1939379..1940191 (-) | 813 | WP_002938438.1 | pur operon repressor | - |
| NJAUSS_RS09560 (NJAUSS_1835) | - | 1940293..1941159 (-) | 867 | WP_012027872.1 | aminoglycoside phosphotransferase family protein | - |
| NJAUSS_RS09565 (NJAUSS_1836) | - | 1941159..1942100 (-) | 942 | WP_012775359.1 | 3'-5' exoribonuclease YhaM family protein | - |
| NJAUSS_RS09570 (NJAUSS_1837) | - | 1942090..1943328 (-) | 1239 | WP_012027874.1 | DNA recombination protein RmuC | - |
| NJAUSS_RS09575 (NJAUSS_1838) | - | 1943329..1943961 (-) | 633 | WP_012027875.1 | thiamine diphosphokinase | - |
| NJAUSS_RS09580 (NJAUSS_1839) | rpe | 1943954..1944613 (-) | 660 | WP_012027876.1 | ribulose-phosphate 3-epimerase | - |
| NJAUSS_RS09585 (NJAUSS_1840) | rsgA | 1944628..1945503 (-) | 876 | WP_012027877.1 | ribosome small subunit-dependent GTPase A | - |
| NJAUSS_RS09595 (NJAUSS_1842) | - | 1946400..1947977 (-) | 1578 | WP_012027878.1 | ATP-binding cassette domain-containing protein | - |
| NJAUSS_RS09600 (NJAUSS_1843) | - | 1947974..1949215 (-) | 1242 | WP_014636518.1 | radical SAM protein | - |
| NJAUSS_RS09605 (NJAUSS_1844) | - | 1949584..1950447 (-) | 864 | WP_012027880.1 | helix-turn-helix domain-containing protein | - |
| NJAUSS_RS09615 (NJAUSS_1845) | - | 1950937..1953381 (-) | 2445 | WP_012027881.1 | LTA synthase family protein | - |
| NJAUSS_RS09620 (NJAUSS_1846) | - | 1953394..1955124 (-) | 1731 | WP_012775361.1 | membrane protein | - |
| NJAUSS_RS09625 (NJAUSS_1847) | rsmA | 1955489..1956361 (-) | 873 | WP_012775362.1 | 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA | - |
| NJAUSS_RS09630 (NJAUSS_1848) | - | 1956381..1956911 (-) | 531 | WP_009910909.1 | DUF1697 domain-containing protein | - |
| NJAUSS_RS09635 (NJAUSS_1849) | - | 1956925..1957182 (-) | 258 | WP_012775363.1 | Txe/YoeB family addiction module toxin | - |
| NJAUSS_RS09640 (NJAUSS_1850) | - | 1957184..1957444 (-) | 261 | WP_002939010.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| NJAUSS_RS09645 (NJAUSS_1851) | - | 1957520..1957975 (-) | 456 | WP_012028534.1 | 8-oxo-dGTP diphosphatase | - |
| NJAUSS_RS09650 (NJAUSS_1852) | - | 1957982..1958311 (-) | 330 | WP_012775364.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NJAUSS_RS09655 (NJAUSS_1853) | - | 1958301..1958588 (-) | 288 | WP_012028535.1 | hypothetical protein | - |
| NJAUSS_RS09660 (NJAUSS_1854) | - | 1958686..1959054 (-) | 369 | WP_012775453.1 | hypothetical protein | - |
| NJAUSS_RS09665 (NJAUSS_1855) | rnmV | 1959047..1959616 (-) | 570 | WP_012775366.1 | ribonuclease M5 | - |
| NJAUSS_RS09670 (NJAUSS_1856) | - | 1959600..1960382 (-) | 783 | WP_012028536.1 | TatD family hydrolase | - |
Sequence
Protein
Download Length: 817 a.a. Molecular weight: 90162.56 Da Isoelectric Point: 6.3138
>NTDB_id=56840 NJAUSS_RS09480 WP_014636516.1 1921053..1923506(-) (clpC) [Streptococcus suis SC070731]
MKISRGLQGVYEDAQLIAQRYSSDYLETWHLLLAFVINPDTVAGAILAEYPADVLDYERAVYMVMGRRYHEELESFFFLP
SSKRVKELQVFAEKIAEIVKSKGLGTEHIFMGMLLDKRSTASQILDQVGFHFEDSDDKVRFLDLRKNLEAKAGFTKEHLK
AIRTMTKGGKPKQATVGNMMGMTQSQSGGLEDYTRDLTALARSGQLEPVIGRDEEISRMLQILSRKTKNNPVLVGDAGVG
KTALALGLAQRIANGEVPASLVNMRILELDLMNVIAGTRFRGDFEERMNNIINDIEEDGRVILFIDELHTIMGSGSGIDS
ILDAANILKPALSRGTLRTVGATTQDEYQKHIEKDAALVRRFAKVTIEEPSVADSVAILQGLKPAYEAHHKVTISDQAVV
TAVAYAKRYLTSKNLPDSAIDLLDEASATVQNRAKGQVEEGGLTALDQALMAGKYKTVTQLLLKAQEAENQATSYSLEVT
EEDILATLSRLSGIPVTKLSQTDAKKYLNLEQELHKRVIGQEEAISAVSRAIRRNQSGIRTGHRPIGSFMFLGPTGVGKT
ELAKALAEILFDDESALIRFDMSEYMEKFATSRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQ
VLDDGVLTDRKGRKVDFSNTVIIMTSNLGATALRDDKTVGFGALDLSKSQEHVEKRIFEALKKAYRPEFINRIDEKVVFH
SLTEADMQDVVKVMVKPLIAVAASKGITLKLQASALKLLAKEGYDPEMGARPLRRLLQTKLEDPLAEMLLRGELPAGVTL
KVGVKAEQLKFDSVKAG
MKISRGLQGVYEDAQLIAQRYSSDYLETWHLLLAFVINPDTVAGAILAEYPADVLDYERAVYMVMGRRYHEELESFFFLP
SSKRVKELQVFAEKIAEIVKSKGLGTEHIFMGMLLDKRSTASQILDQVGFHFEDSDDKVRFLDLRKNLEAKAGFTKEHLK
AIRTMTKGGKPKQATVGNMMGMTQSQSGGLEDYTRDLTALARSGQLEPVIGRDEEISRMLQILSRKTKNNPVLVGDAGVG
KTALALGLAQRIANGEVPASLVNMRILELDLMNVIAGTRFRGDFEERMNNIINDIEEDGRVILFIDELHTIMGSGSGIDS
ILDAANILKPALSRGTLRTVGATTQDEYQKHIEKDAALVRRFAKVTIEEPSVADSVAILQGLKPAYEAHHKVTISDQAVV
TAVAYAKRYLTSKNLPDSAIDLLDEASATVQNRAKGQVEEGGLTALDQALMAGKYKTVTQLLLKAQEAENQATSYSLEVT
EEDILATLSRLSGIPVTKLSQTDAKKYLNLEQELHKRVIGQEEAISAVSRAIRRNQSGIRTGHRPIGSFMFLGPTGVGKT
ELAKALAEILFDDESALIRFDMSEYMEKFATSRLNGAPPGYVGYEEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQ
VLDDGVLTDRKGRKVDFSNTVIIMTSNLGATALRDDKTVGFGALDLSKSQEHVEKRIFEALKKAYRPEFINRIDEKVVFH
SLTEADMQDVVKVMVKPLIAVAASKGITLKLQASALKLLAKEGYDPEMGARPLRRLLQTKLEDPLAEMLLRGELPAGVTL
KVGVKAEQLKFDSVKAG
Nucleotide
Download Length: 2454 bp
>NTDB_id=56840 NJAUSS_RS09480 WP_014636516.1 1921053..1923506(-) (clpC) [Streptococcus suis SC070731]
ATGAAGATTTCAAGAGGGTTACAGGGTGTCTATGAAGATGCTCAATTGATTGCACAGCGTTATAGTAGTGACTATTTGGA
GACCTGGCACTTGTTGTTAGCCTTTGTCATCAATCCAGATACCGTTGCGGGAGCTATTTTAGCAGAATATCCTGCGGATG
TATTGGACTATGAACGTGCAGTTTATATGGTGATGGGGCGGCGTTACCATGAAGAGTTAGAGAGCTTTTTCTTTCTTCCA
TCGTCCAAGCGGGTGAAGGAATTGCAGGTCTTTGCCGAGAAGATTGCGGAGATTGTCAAGAGTAAGGGGCTAGGAACGGA
GCATATTTTCATGGGAATGCTCTTGGACAAGCGTTCGACTGCCTCACAAATTCTGGATCAGGTCGGTTTTCACTTTGAGG
ATTCGGATGATAAGGTTCGTTTTCTGGATTTGCGGAAAAATCTGGAAGCCAAGGCTGGCTTTACCAAGGAGCATCTGAAG
GCTATCCGCACCATGACGAAAGGTGGCAAGCCCAAGCAGGCAACGGTTGGCAATATGATGGGCATGACCCAGTCACAAAG
TGGTGGCTTGGAAGACTATACACGTGATTTGACGGCTTTGGCCCGCTCAGGTCAGTTGGAGCCAGTCATCGGACGGGATG
AGGAAATTTCCCGTATGCTTCAGATTTTGTCGCGGAAAACCAAGAACAATCCTGTCTTGGTTGGAGATGCGGGTGTTGGG
AAAACAGCTCTGGCACTGGGTCTAGCCCAGCGGATTGCTAATGGAGAGGTGCCAGCTAGTCTTGTCAATATGCGGATCTT
GGAATTGGACTTGATGAATGTCATTGCGGGAACGCGTTTCCGTGGGGATTTTGAGGAGCGGATGAACAATATCATCAACG
ATATTGAAGAAGATGGTCGAGTGATTCTCTTCATTGATGAACTCCATACCATTATGGGATCGGGGTCAGGGATTGACTCG
ATCCTGGATGCTGCCAATATTTTGAAGCCTGCTCTGTCCCGTGGGACTTTGCGGACAGTTGGAGCAACGACTCAGGATGA
ATACCAGAAGCATATTGAAAAAGATGCTGCCTTAGTACGTCGATTTGCCAAGGTGACCATTGAGGAACCGAGTGTAGCAG
ACAGCGTAGCAATTTTGCAGGGGTTGAAGCCAGCCTATGAGGCTCACCACAAGGTGACCATTTCGGATCAGGCGGTGGTA
ACGGCGGTAGCCTATGCCAAACGCTATCTGACCAGTAAGAATTTGCCAGATTCGGCTATTGATTTGCTGGATGAAGCCAG
TGCGACGGTTCAAAATCGTGCCAAGGGACAGGTAGAAGAAGGTGGATTGACCGCTTTAGACCAAGCCTTGATGGCTGGGA
AATACAAGACGGTAACGCAGCTCTTGCTTAAGGCTCAAGAGGCGGAAAATCAGGCGACTAGCTATAGCTTGGAAGTCACA
GAAGAAGACATTTTGGCAACCCTCAGTCGCTTGTCAGGTATTCCTGTCACCAAACTGAGTCAGACAGATGCCAAGAAGTA
CCTTAATCTTGAACAGGAATTGCACAAGCGTGTTATCGGGCAGGAAGAGGCGATTTCAGCTGTCAGCCGGGCAATTCGCC
GCAACCAGTCAGGCATTCGCACTGGTCACAGACCGATTGGTTCCTTTATGTTCTTGGGGCCAACAGGTGTCGGTAAGACA
GAATTGGCCAAGGCCTTGGCGGAGATCCTCTTTGATGACGAATCTGCCTTGATTCGTTTTGATATGAGTGAGTATATGGA
GAAATTTGCGACTAGTCGCCTCAACGGTGCTCCTCCAGGCTATGTTGGCTATGAAGAAGGGGGCGAGCTGACAGAAAAAG
TTCGCAACAAGCCATACTCTGTCCTACTTTTTGATGAGGTGGAGAAAGCACATCCAGATATTTTCAATGTTCTTTTGCAG
GTCTTGGATGACGGTGTCTTGACGGACAGAAAAGGTCGCAAGGTTGATTTCTCTAATACGGTCATCATTATGACGTCTAA
CTTAGGGGCAACCGCTTTACGTGATGATAAGACAGTTGGGTTTGGGGCTCTTGATTTGTCTAAGAGTCAGGAACACGTTG
AAAAACGGATTTTTGAGGCGTTGAAGAAGGCCTATCGTCCTGAATTTATTAACCGGATTGATGAAAAAGTGGTCTTCCAT
AGCCTGACAGAAGCAGATATGCAGGATGTGGTCAAGGTCATGGTCAAACCATTGATTGCCGTGGCGGCCAGCAAGGGTAT
TACCCTCAAATTGCAGGCTTCTGCTCTTAAACTCTTGGCCAAAGAAGGCTACGATCCAGAAATGGGTGCCCGCCCACTTC
GTCGCCTCCTCCAAACCAAGTTGGAAGATCCATTGGCAGAAATGCTCTTACGTGGAGAACTGCCAGCTGGTGTGACCTTA
AAAGTAGGGGTCAAGGCCGAGCAGTTGAAGTTTGATAGTGTGAAAGCAGGTTAG
ATGAAGATTTCAAGAGGGTTACAGGGTGTCTATGAAGATGCTCAATTGATTGCACAGCGTTATAGTAGTGACTATTTGGA
GACCTGGCACTTGTTGTTAGCCTTTGTCATCAATCCAGATACCGTTGCGGGAGCTATTTTAGCAGAATATCCTGCGGATG
TATTGGACTATGAACGTGCAGTTTATATGGTGATGGGGCGGCGTTACCATGAAGAGTTAGAGAGCTTTTTCTTTCTTCCA
TCGTCCAAGCGGGTGAAGGAATTGCAGGTCTTTGCCGAGAAGATTGCGGAGATTGTCAAGAGTAAGGGGCTAGGAACGGA
GCATATTTTCATGGGAATGCTCTTGGACAAGCGTTCGACTGCCTCACAAATTCTGGATCAGGTCGGTTTTCACTTTGAGG
ATTCGGATGATAAGGTTCGTTTTCTGGATTTGCGGAAAAATCTGGAAGCCAAGGCTGGCTTTACCAAGGAGCATCTGAAG
GCTATCCGCACCATGACGAAAGGTGGCAAGCCCAAGCAGGCAACGGTTGGCAATATGATGGGCATGACCCAGTCACAAAG
TGGTGGCTTGGAAGACTATACACGTGATTTGACGGCTTTGGCCCGCTCAGGTCAGTTGGAGCCAGTCATCGGACGGGATG
AGGAAATTTCCCGTATGCTTCAGATTTTGTCGCGGAAAACCAAGAACAATCCTGTCTTGGTTGGAGATGCGGGTGTTGGG
AAAACAGCTCTGGCACTGGGTCTAGCCCAGCGGATTGCTAATGGAGAGGTGCCAGCTAGTCTTGTCAATATGCGGATCTT
GGAATTGGACTTGATGAATGTCATTGCGGGAACGCGTTTCCGTGGGGATTTTGAGGAGCGGATGAACAATATCATCAACG
ATATTGAAGAAGATGGTCGAGTGATTCTCTTCATTGATGAACTCCATACCATTATGGGATCGGGGTCAGGGATTGACTCG
ATCCTGGATGCTGCCAATATTTTGAAGCCTGCTCTGTCCCGTGGGACTTTGCGGACAGTTGGAGCAACGACTCAGGATGA
ATACCAGAAGCATATTGAAAAAGATGCTGCCTTAGTACGTCGATTTGCCAAGGTGACCATTGAGGAACCGAGTGTAGCAG
ACAGCGTAGCAATTTTGCAGGGGTTGAAGCCAGCCTATGAGGCTCACCACAAGGTGACCATTTCGGATCAGGCGGTGGTA
ACGGCGGTAGCCTATGCCAAACGCTATCTGACCAGTAAGAATTTGCCAGATTCGGCTATTGATTTGCTGGATGAAGCCAG
TGCGACGGTTCAAAATCGTGCCAAGGGACAGGTAGAAGAAGGTGGATTGACCGCTTTAGACCAAGCCTTGATGGCTGGGA
AATACAAGACGGTAACGCAGCTCTTGCTTAAGGCTCAAGAGGCGGAAAATCAGGCGACTAGCTATAGCTTGGAAGTCACA
GAAGAAGACATTTTGGCAACCCTCAGTCGCTTGTCAGGTATTCCTGTCACCAAACTGAGTCAGACAGATGCCAAGAAGTA
CCTTAATCTTGAACAGGAATTGCACAAGCGTGTTATCGGGCAGGAAGAGGCGATTTCAGCTGTCAGCCGGGCAATTCGCC
GCAACCAGTCAGGCATTCGCACTGGTCACAGACCGATTGGTTCCTTTATGTTCTTGGGGCCAACAGGTGTCGGTAAGACA
GAATTGGCCAAGGCCTTGGCGGAGATCCTCTTTGATGACGAATCTGCCTTGATTCGTTTTGATATGAGTGAGTATATGGA
GAAATTTGCGACTAGTCGCCTCAACGGTGCTCCTCCAGGCTATGTTGGCTATGAAGAAGGGGGCGAGCTGACAGAAAAAG
TTCGCAACAAGCCATACTCTGTCCTACTTTTTGATGAGGTGGAGAAAGCACATCCAGATATTTTCAATGTTCTTTTGCAG
GTCTTGGATGACGGTGTCTTGACGGACAGAAAAGGTCGCAAGGTTGATTTCTCTAATACGGTCATCATTATGACGTCTAA
CTTAGGGGCAACCGCTTTACGTGATGATAAGACAGTTGGGTTTGGGGCTCTTGATTTGTCTAAGAGTCAGGAACACGTTG
AAAAACGGATTTTTGAGGCGTTGAAGAAGGCCTATCGTCCTGAATTTATTAACCGGATTGATGAAAAAGTGGTCTTCCAT
AGCCTGACAGAAGCAGATATGCAGGATGTGGTCAAGGTCATGGTCAAACCATTGATTGCCGTGGCGGCCAGCAAGGGTAT
TACCCTCAAATTGCAGGCTTCTGCTCTTAAACTCTTGGCCAAAGAAGGCTACGATCCAGAAATGGGTGCCCGCCCACTTC
GTCGCCTCCTCCAAACCAAGTTGGAAGATCCATTGGCAGAAATGCTCTTACGTGGAGAACTGCCAGCTGGTGTGACCTTA
AAAGTAGGGGTCAAGGCCGAGCAGTTGAAGTTTGATAGTGTGAAAGCAGGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Streptococcus pneumoniae TIGR4 |
71.341 |
99.51 |
0.71 |
| clpC | Streptococcus pneumoniae Rx1 |
71.341 |
99.51 |
0.71 |
| clpC | Streptococcus pneumoniae D39 |
71.341 |
99.51 |
0.71 |
| clpC | Streptococcus mutans UA159 |
66.049 |
99.143 |
0.655 |
| clpC | Streptococcus thermophilus LMG 18311 |
64.706 |
99.878 |
0.646 |
| clpC | Streptococcus thermophilus LMD-9 |
64.583 |
99.878 |
0.645 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
48.206 |
100 |
0.493 |
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
44.526 |
99.51 |
0.443 |