Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MK848_RS11035 Genome accession   NZ_CP092824
Coordinates   2162926..2164059 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain S1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2157926..2169059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS10995 (MK848_10985) ywnA 2158088..2158489 (-) 402 WP_029318719.1 Rrf2 family transcriptional regulator -
  MK848_RS11000 (MK848_10990) ureC 2158624..2160333 (-) 1710 WP_069703623.1 urease subunit alpha -
  MK848_RS11005 (MK848_10995) ureB 2160330..2160704 (-) 375 WP_003227726.1 urease subunit beta -
  MK848_RS11010 (MK848_11000) ureA 2160701..2161018 (-) 318 WP_003227724.1 urease subunit gamma -
  MK848_RS11015 (MK848_11005) - 2161212..2161370 (-) 159 WP_129010257.1 hypothetical protein -
  MK848_RS11020 (MK848_11010) - 2161550..2161732 (-) 183 WP_029318717.1 transporter substrate-binding protein -
  MK848_RS11025 (MK848_11015) csbD 2162031..2162219 (-) 189 WP_003227718.1 stress response protein CsbD -
  MK848_RS11030 (MK848_11020) - 2162292..2162771 (-) 480 WP_003244390.1 hypothetical protein -
  MK848_RS11035 (MK848_11025) rapC 2162926..2164059 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  MK848_RS11040 (MK848_11030) moaA 2164251..2165276 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  MK848_RS11045 (MK848_11035) fdhD 2165292..2166080 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  MK848_RS11050 (MK848_11040) - 2166313..2166474 (-) 162 WP_003227706.1 hypothetical protein -
  MK848_RS11055 (MK848_11045) ywmD 2166569..2167243 (-) 675 WP_003243553.1 VWA domain-containing protein -
  MK848_RS11060 (MK848_11050) - 2167296..2167436 (-) 141 WP_014478246.1 hypothetical protein -
  MK848_RS11065 (MK848_11055) ywmC 2167567..2168250 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=568397 MK848_RS11035 WP_003227715.1 2162926..2164059(-) (rapC) [Bacillus subtilis strain S1]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=568397 MK848_RS11035 WP_003227715.1 2162926..2164059(-) (rapC) [Bacillus subtilis strain S1]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424