Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   MK848_RS03750 Genome accession   NZ_CP092824
Coordinates   791454..792944 (-) Length   496 a.a.
NCBI ID   WP_029317970.1    Uniprot ID   -
Organism   Bacillus subtilis strain S1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 786454..797944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS03720 (MK848_03725) gudB 786608..787882 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  MK848_RS03725 (MK848_03730) mecB 788038..788622 (-) 585 WP_003230533.1 genetic competence negative regulator -
  MK848_RS03730 (MK848_03735) ypbG 788781..789560 (-) 780 WP_029317973.1 metallophosphoesterase -
  MK848_RS03735 (MK848_03740) ypbF 789646..790089 (-) 444 WP_029317972.1 YpbF family protein -
  MK848_RS03740 (MK848_03745) claE 790152..790874 (-) 723 WP_029317971.1 LysM peptidoglycan-binding domain-containing protein -
  MK848_RS03745 (MK848_03750) ypbD 790825..791427 (-) 603 WP_003230529.1 CPBP family intramembrane glutamic endopeptidase -
  MK848_RS03750 (MK848_03755) recS 791454..792944 (-) 1491 WP_029317970.1 ATP-dependent DNA helicase RecQ Machinery gene
  MK848_RS03755 (MK848_03760) gmmB 792937..793995 (-) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  MK848_RS03760 (MK848_03765) fdxA 794261..794509 (+) 249 WP_003225461.1 ferredoxin -
  MK848_RS03765 (MK848_03770) fmnP 794549..795121 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  MK848_RS03770 (MK848_03775) serA 795618..797195 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56594.15 Da        Isoelectric Point: 6.4518

>NTDB_id=568342 MK848_RS03750 WP_029317970.1 791454..792944(-) (recS) [Bacillus subtilis strain S1]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHQYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPRDFELQEQIIQMESVTAEEIADVIRLLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=568342 MK848_RS03750 WP_029317970.1 791454..792944(-) (recS) [Bacillus subtilis strain S1]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAGGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCAATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTTCCGATTAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACTCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCAACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCATCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGTGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAAGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTTTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-180)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992