Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   MK848_RS00435 Genome accession   NZ_CP092824
Coordinates   81371..81820 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain S1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 76371..86820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK848_RS00395 (MK848_00395) ctaE 76389..77012 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  MK848_RS00400 (MK848_00400) ctaF 77015..77347 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  MK848_RS00405 (MK848_00405) ctaG 77375..78268 (+) 894 WP_029317760.1 cytochrome c oxidase assembly factor CtaG -
  MK848_RS00410 (MK848_00410) ylbA 78300..78662 (-) 363 WP_003232238.1 YugN family protein -
  MK848_RS00415 (MK848_00415) ylbB 78800..79246 (+) 447 WP_003221362.1 CBS domain-containing protein -
  MK848_RS00420 (MK848_00420) ylbC 79330..80370 (+) 1041 WP_015483195.1 CAP domain-containing protein -
  MK848_RS00425 (MK848_00425) ylbD 80602..81000 (+) 399 WP_003232233.1 YlbD family protein -
  MK848_RS00430 (MK848_00430) ylbE 81016..81255 (+) 240 WP_003232231.1 YlbE-like family protein -
  MK848_RS00435 (MK848_00435) ylbF 81371..81820 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  MK848_RS00440 (MK848_00440) ylbG 81875..82147 (+) 273 WP_015715839.1 YlbG family protein -
  MK848_RS00445 (MK848_00445) rsmD 82470..83024 (+) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MK848_RS00450 (MK848_00450) coaD 83029..83514 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  MK848_RS00455 (MK848_00455) spoVV 83525..84751 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  MK848_RS00460 (MK848_00460) ylbK 84932..85714 (+) 783 WP_101172457.1 patatin family protein -
  MK848_RS00465 (MK848_00465) sepM 85716..86741 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=568321 MK848_RS00435 WP_003221370.1 81371..81820(+) (ylbF) [Bacillus subtilis strain S1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=568321 MK848_RS00435 WP_003221370.1 81371..81820(+) (ylbF) [Bacillus subtilis strain S1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1