Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KIK04_RS12710 Genome accession   NZ_CP075175
Coordinates   2917375..2918742 (+) Length   455 a.a.
NCBI ID   WP_232274079.1    Uniprot ID   -
Organism   Paenibacillus sp. 481     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2912375..2923742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK04_RS12695 (KIK04_12765) - 2912845..2913393 (+) 549 WP_232274076.1 UvrB/UvrC motif-containing protein -
  KIK04_RS12700 (KIK04_12770) - 2913421..2914488 (+) 1068 WP_232274077.1 protein arginine kinase -
  KIK04_RS12705 (KIK04_12775) clpC 2914512..2917001 (+) 2490 WP_232274078.1 ATP-dependent protease ATP-binding subunit ClpC -
  KIK04_RS12710 (KIK04_12780) radA 2917375..2918742 (+) 1368 WP_232274079.1 DNA repair protein RadA Machinery gene
  KIK04_RS12715 (KIK04_12785) disA 2918759..2919832 (+) 1074 WP_232274080.1 DNA integrity scanning diadenylate cyclase DisA -
  KIK04_RS12720 (KIK04_12790) pssA 2919925..2920647 (+) 723 WP_232274081.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  KIK04_RS12725 (KIK04_12795) - 2920883..2921278 (-) 396 WP_232274082.1 DUF1573 domain-containing protein -
  KIK04_RS12730 (KIK04_12800) - 2921481..2922566 (+) 1086 WP_232274083.1 PIN/TRAM domain-containing protein -
  KIK04_RS12735 (KIK04_12805) ispD 2922616..2923314 (+) 699 WP_232274084.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49250.88 Da        Isoelectric Point: 7.1760

>NTDB_id=568304 KIK04_RS12710 WP_232274079.1 2917375..2918742(+) (radA) [Paenibacillus sp. 481]
MAKVKTKFNCTECGYETAKWMGKCPGCNQWNTMVEERETIVKTAGVQSSLFTAKEKPQSIIHIESGREPRISTTLSELNR
VLGGGVVPGSLILVGGDPGIGKSTLLLQTSNALATSGLKVLYVSGEESMRQTKLRADRLGALSERLFVLSETNLHFIEEA
IEAMQPDFLVIDSIQTVYQPSVESAPGSVAQVRECTSAFMRVSKGKGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHSYRILRAVKNRFGSTNEIGIFEMGEGGLVEVKNPSEMFLQERPLGVAGSTVVASIEGTRPVLVEMQALVSATNFPS
PRRMATGIDHHRLALIIAVLEKRMGMFLQNQDAYVNVAGGMKLDEPAVDLAIAVAIASSFRDVSTQPFDAVFGEIGLTGE
VRAVSRAEQRVKEAEKLGFKRIIMPESSLRGWKPPAHIEIVGVNTVAQALAVALG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=568304 KIK04_RS12710 WP_232274079.1 2917375..2918742(+) (radA) [Paenibacillus sp. 481]
ATGGCCAAAGTAAAGACGAAGTTCAATTGCACAGAATGTGGATATGAAACAGCGAAGTGGATGGGAAAATGTCCTGGCTG
CAATCAATGGAACACGATGGTTGAAGAACGGGAAACGATTGTAAAGACTGCGGGCGTACAATCTTCCTTGTTTACGGCGA
AAGAAAAGCCACAATCGATCATACACATAGAAAGTGGGCGCGAACCGCGCATATCAACAACGTTAAGCGAACTGAACCGC
GTATTAGGCGGTGGAGTTGTACCTGGCTCGCTCATTCTTGTAGGTGGAGATCCGGGTATTGGTAAGTCCACTTTGCTGTT
GCAAACCTCAAATGCACTTGCAACAAGTGGTTTAAAAGTACTGTATGTGTCTGGTGAGGAGTCGATGCGTCAGACGAAGC
TGCGTGCTGATCGTTTGGGTGCTTTATCAGAACGTTTGTTCGTTCTAAGCGAGACGAATCTGCATTTTATTGAGGAAGCC
ATCGAGGCTATGCAGCCCGATTTCCTCGTAATTGATTCTATACAAACTGTTTATCAGCCATCAGTTGAGTCTGCACCAGG
CAGCGTAGCTCAAGTGCGTGAGTGTACGAGTGCTTTTATGCGCGTATCCAAAGGAAAAGGTATCGCTACTGTATTGGTTG
GACATGTGACCAAAGAAGGCGCTATCGCTGGACCGCGCATGTTGGAGCATATGGTTGACTGCGTGCTTTATTTTGAAGGT
GAGCGGCACCATTCGTATCGCATATTGCGCGCTGTTAAAAATCGATTCGGCTCTACGAATGAGATCGGCATTTTTGAGAT
GGGTGAAGGCGGTCTCGTTGAAGTAAAGAACCCATCCGAGATGTTTTTACAAGAGCGTCCGCTTGGCGTAGCTGGTTCTA
CCGTTGTTGCCAGCATAGAAGGGACGCGACCAGTGCTAGTTGAAATGCAGGCACTTGTCTCGGCTACTAATTTCCCGTCT
CCAAGGCGCATGGCTACGGGAATTGACCATCATAGGCTTGCTCTTATCATCGCTGTGCTTGAGAAGCGAATGGGCATGTT
CCTGCAAAATCAAGATGCTTATGTGAATGTAGCAGGTGGCATGAAGCTGGATGAGCCGGCTGTTGACTTGGCGATAGCTG
TCGCCATCGCGTCGAGCTTCCGCGATGTGTCTACTCAGCCATTCGACGCTGTATTTGGCGAAATCGGGCTGACTGGAGAA
GTTCGCGCCGTATCGCGTGCTGAACAACGTGTTAAAGAGGCAGAGAAGCTTGGATTCAAGCGCATTATTATGCCAGAGAG
CAGTTTACGAGGCTGGAAACCGCCTGCACATATTGAGATTGTTGGCGTGAATACGGTAGCGCAAGCTTTAGCAGTGGCGT
TAGGTTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-220)

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.142

100

0.657
  radA Streptococcus mitis NCTC 12261

57.871

99.121

0.574
  radA Streptococcus mitis SK321

57.871

99.121

0.574
  radA Streptococcus pneumoniae Rx1

57.65

99.121

0.571
  radA Streptococcus pneumoniae D39

57.65

99.121

0.571
  radA Streptococcus pneumoniae R6

57.65

99.121

0.571
  radA Streptococcus pneumoniae TIGR4

57.65

99.121

0.571