Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   KIP81_RS09120 Genome accession   NZ_CP075172
Coordinates   1838513..1839874 (-) Length   453 a.a.
NCBI ID   WP_033153501.1    Uniprot ID   A0A6G8HZM5
Organism   Streptococcus equinus strain SheepZ001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1833513..1844874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS09100 (KIP81_09090) - 1833944..1835110 (-) 1167 WP_021143228.1 MFS transporter -
  KIP81_RS09105 (KIP81_09095) gltX 1835308..1836765 (-) 1458 WP_021143229.1 glutamate--tRNA ligase -
  KIP81_RS09110 (KIP81_09100) - 1836944..1837870 (-) 927 WP_243602867.1 aldo/keto reductase -
  KIP81_RS09115 (KIP81_09105) - 1837899..1838396 (-) 498 WP_243602868.1 carbonic anhydrase -
  KIP81_RS09120 (KIP81_09110) radA 1838513..1839874 (-) 1362 WP_033153501.1 DNA repair protein RadA Machinery gene
  KIP81_RS09125 (KIP81_09115) - 1839910..1840356 (-) 447 WP_021143233.1 dUTP diphosphatase -
  KIP81_RS09130 (KIP81_09120) - 1840383..1841150 (-) 768 WP_024344390.1 epoxyqueuosine reductase QueH -
  KIP81_RS09135 (KIP81_09125) - 1841356..1842372 (+) 1017 WP_024344391.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  KIP81_RS09140 (KIP81_09130) galU 1842444..1843364 (+) 921 WP_045798411.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KIP81_RS09145 (KIP81_09135) - 1843412..1844083 (-) 672 WP_074483843.1 rhomboid family intramembrane serine protease -
  KIP81_RS09150 (KIP81_09140) - 1844080..1844607 (-) 528 WP_243602869.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49450.86 Da        Isoelectric Point: 6.3749

>NTDB_id=568279 KIP81_RS09120 WP_033153501.1 1838513..1839874(-) (radA) [Streptococcus equinus strain SheepZ001]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSINYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLAEKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLVGIDMPSSIEVVGVTTVGEVLKKVFK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=568279 KIP81_RS09120 WP_033153501.1 1838513..1839874(-) (radA) [Streptococcus equinus strain SheepZ001]
ATCGCTAAGAAGAAAACAACGTTTATTTGTCAGGAGTGTGGCTATCATTCTCCTAAATATCTAGGACGTTGTCCAAACTG
TTCATCTTGGACGTCTTTTGTTGAAGAAGTCGAAGTACAAGAGGTTAAAAATGCGCGTGTCAGTTTGACAGGTGAAAAGA
GCAAACCAACTAAGTTGAAGGACGTTAGCTCGATTAATTATTCGCGCACAAAGACTGGCATGGATGAATTTAACCGTGTG
CTCGGTGGCGGTGTGGTGCCAGGTAGTCTGGTGCTTATCGGTGGTGATCCAGGTATCGGGAAATCAACGCTTCTTTTGCA
GGTTTCGATTCAGCTGGCAGAGAAAGGAACGGTTCTTTACGTTTCTGGTGAAGAATCAGCTGAGCAGATTAAACTTCGCA
GTGAACGCCTTGGTGATATTGATAATGAATTTTACCTTTATGCTGAGACAAATATGCAAGCTATCCGTGCGCAGATTGAG
CAAATCCAGCCTGATTTCTTAATTATTGACTCGATTCAAACGATTATGAGTCCTGATATTTCAGGAGTCCAAGGTTCGGT
ATCTCAAGTGCGTGAAGTGACGGCAGAGCTCATGCAGTTGGCTAAGACTAATAACATCGCAACCTTTATCGTTGGTCACG
TGACTAAGGAAGGACAGCTTGCTGGTCCGCGTATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAGGGTGAACGC
CATCATACTTTCCGTATCTTGCGTGCAGTGAAAAACCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAGTC
TGGTGGGCTGGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTAGAGGAACGTTTGGATGGCGCAACTGGCTCAGCTATCG
TGGTAACCATGGAAGGTAGTCGTCCGATTTTGGCGGAGGTTCAAGCTTTGGTGACACCGACTGTTTTTGGAAATGCCAAA
CGAACAACGACTGGGCTTGATTTCAATCGCGTTAGTCTGATTATGGCGGTGCTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATCTCAAATCTGCTGGTGGTGTCAAACTTGATGAGCCAGCAATTGATTTGGCAGTAGCGGTAGCTA
TTGCGTCAAGCTACAAAGAAAAGCCGACAAATCCACAAGAAGCTTTTATCGGTGAAATTGGTTTGACAGGTGAAATCCGT
CGCGTCACTCGTATTGAACAACGTATCAATGAAGCAGCTAAGCTTGGCTTTACAAAAGTTTACGCACCGAAAAATTCTTT
AGTTGGTATCGATATGCCATCATCTATTGAAGTTGTTGGTGTGACAACTGTTGGAGAAGTTCTTAAGAAAGTTTTTAAAT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(71-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8HZM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.496

99.779

0.883
  radA Streptococcus pneumoniae D39

88.496

99.779

0.883
  radA Streptococcus pneumoniae R6

88.496

99.779

0.883
  radA Streptococcus pneumoniae TIGR4

88.496

99.779

0.883
  radA Streptococcus mitis SK321

88.496

99.779

0.883
  radA Streptococcus mitis NCTC 12261

88.274

99.779

0.881
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62