Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   KIP81_RS02040 Genome accession   NZ_CP075172
Coordinates   381705..382751 (+) Length   348 a.a.
NCBI ID   WP_243603066.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 376705..387751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS02025 (KIP81_02035) - 377972..379624 (+) 1653 WP_243603065.1 peptide ABC transporter substrate-binding protein -
  KIP81_RS02030 (KIP81_02040) - 379736..380650 (+) 915 WP_021141673.1 ABC transporter permease -
  KIP81_RS02035 (KIP81_02045) - 380662..381693 (+) 1032 WP_039697643.1 ABC transporter permease -
  KIP81_RS02040 (KIP81_02050) oppD 381705..382751 (+) 1047 WP_243603066.1 ABC transporter ATP-binding protein Regulator
  KIP81_RS02045 (KIP81_02055) amiF 382751..383683 (+) 933 WP_003067560.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38552.05 Da        Isoelectric Point: 4.8013

>NTDB_id=568231 KIP81_RS02040 WP_243603066.1 381705..382751(+) (oppD) [Streptococcus equinus strain SheepZ001]
MSEETILQVKNLHVDFHTYAGEIKAIRDVNFDLKKGETLAIVGESGSGKSVTTKTLMGLSASNATITGEIDFKGKKLTEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKQEAWARALDLMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDVLIADEPTTALDVTIQAQILNLMKKIQKESGSSIIFITHDLGVVAGMADRVAVMYAGKVIEYGSV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHYAATWLL
DERAPEVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=568231 KIP81_RS02040 WP_243603066.1 381705..382751(+) (oppD) [Streptococcus equinus strain SheepZ001]
ATGAGTGAAGAAACAATTTTACAAGTTAAAAACCTCCATGTAGATTTCCATACCTACGCTGGAGAAATTAAAGCTATCCG
TGATGTCAATTTTGACTTGAAGAAAGGTGAAACCCTTGCTATCGTAGGTGAATCTGGATCAGGTAAATCTGTAACTACAA
AAACATTGATGGGGCTTTCTGCTTCAAATGCAACAATTACAGGTGAAATTGACTTTAAAGGTAAAAAACTTACTGAACTA
AAAGAAGACGAATGGATTAAAGTACGTGGAAATGAAATTGCGATGATTTTCCAAGATCCAATGACAAGTCTTGACCCAAC
AATGAAAATTGGTCAACAGATTGCTGAACCAATTATGATTCACGAAAAAGTTTCAAAACAAGAAGCTTGGGCTCGTGCGC
TAGATTTGATGAAAAATGTTGGTATCCCAAATGCTGAAGAACACATCAATGATTACCCACACCAATGGTCAGGTGGTATG
CGTCAACGTGCGGTTATTGCGATTGCACTCGCAGCTAATCCAGATGTTCTGATTGCAGATGAACCAACAACTGCTTTGGA
CGTTACAATTCAAGCACAAATACTTAACTTGATGAAGAAAATTCAAAAAGAAAGTGGTTCATCAATTATCTTCATCACAC
ACGATCTTGGTGTTGTTGCTGGTATGGCTGATCGCGTAGCAGTTATGTATGCTGGTAAAGTGATTGAATATGGTTCAGTT
GATGAAGTATTTTACAATCCACAACATCCATATACTTGGGGCTTGCTAAACTCAATGCCAACGACTGATACAGAAGCTGG
TAGTCTACAATCAATTCCAGGTACTCCACCAGATCTTCTTAATCCGCCAAAAGGTGATGCTTTTGCTCCGCGTAATGAAT
TTGCACTAGACATTGATTACGAAGAAGAACCACCAATGTTTAAAGTTAGCGACACACACTATGCAGCAACCTGGTTGCTA
GATGAACGTGCACCTGAAGTAACACCACCATTACCAATTCAAAAACGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

79.827

99.713

0.796
  amiE Streptococcus salivarius strain HSISS4

56.725

98.276

0.557
  amiE Streptococcus thermophilus LMG 18311

57.313

96.264

0.552
  amiE Streptococcus thermophilus LMD-9

57.313

96.264

0.552