Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcC   Type   Machinery gene
Locus tag   MK616_RS05485 Genome accession   NZ_CP092778
Coordinates   1072408..1075800 (+) Length   1130 a.a.
NCBI ID   WP_174532630.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1067408..1080800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS05475 (MK616_05475) addA 1067470..1071174 (+) 3705 WP_072177147.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  MK616_RS05480 (MK616_05480) sbcD 1071239..1072411 (+) 1173 WP_007409169.1 exonuclease subunit SbcD -
  MK616_RS05485 (MK616_05485) sbcC 1072408..1075800 (+) 3393 WP_174532630.1 exonuclease subunit SbcC Machinery gene
  MK616_RS05490 (MK616_05490) - 1075816..1076109 (+) 294 WP_110124627.1 HNH endonuclease -
  MK616_RS05495 (MK616_05495) - 1076153..1076371 (-) 219 WP_003155143.1 spore germination protein -
  MK616_RS05500 (MK616_05500) - 1076411..1076806 (-) 396 WP_014417372.1 spore germination protein GerPE -
  MK616_RS05505 (MK616_05505) - 1076806..1076982 (-) 177 WP_110124628.1 spore gernimation protein GerPD -
  MK616_RS05510 (MK616_05510) - 1076979..1077596 (-) 618 WP_014417373.1 spore germination protein GerPC -
  MK616_RS05515 (MK616_05515) - 1077632..1077868 (-) 237 WP_007409164.1 spore germination protein GerPB -
  MK616_RS05520 (MK616_05520) - 1077881..1078102 (-) 222 WP_003155135.1 spore germination protein -
  MK616_RS05525 (MK616_05525) - 1078292..1078507 (-) 216 WP_014417374.1 aspartyl-phosphate phosphatase Spo0E family protein -
  MK616_RS05530 (MK616_05530) - 1078725..1079630 (+) 906 WP_007409162.1 fumarylacetoacetate hydrolase family protein -
  MK616_RS05535 (MK616_05535) - 1079724..1080080 (+) 357 WP_003155128.1 YisL family protein -

Sequence

Protein


Download         Length: 1130 a.a.        Molecular weight: 128259.27 Da        Isoelectric Point: 5.6157

>NTDB_id=568205 MK616_RS05485 WP_174532630.1 1072408..1075800(+) (sbcC) [Bacillus amyloliquefaciens strain WF2020]
MKPILLTIKGLHSFREEQTIDFAGLSGAGVFGIFGPTGSGKSSILDAMTLALYGKVERAANNTHGILNHAEDQLAVSFTF
ALQSGHRVSYKVERVFKRTDETKVKTALCRLIEIKDEQTVLADKANEVNKKVEELLGLTIDDFTRAVVLPQGKFAEFLSL
KGAERRHMLQRLFNLEQYGDRLVKKLRRRAQEAAAKKNEMLAEQSGLGDAGEDALKQAEQQFHEANERLEEAEKKRVRAK
ERFENHQEIWNLQTERDEYERREKKLEERRPYITDLTERLKEAETALALEPYADRYTEAVRRKQRAEQEHELAKRKSEAE
TVTFTRQNEAYEAWRAHKAEQEPKLVKEDELYQRLSAIEQKLLEAKKEAEKTNAEHSKKEKEYEAASKQLAAVKDRLTRG
QNRQNELKEELKTVQVTADERKKCQTAAQLAAGFQQTQEQITKERANLTTQLKSVEKLNGESESLTAKAKTEEEDITRAY
QTLQTVYHMVCETERSLKAAAERADKTQADLRRRSEEARTAALTKELSEKLIEGKPCPVCGSTQHDRPRSAHETFSPDTA
VQEQLQQVEALLSEAAALSQEVLTAKVALEEQSGRFTEECPFLQSARVPELEAASSISGRPLDEAFSAVRLEWKQMKQDM
LSVKEKVTRLISAHQQTVKQAEQLAERIRYEEKEADRLRHSLEELESLSESRLNQYNEACGDIPPNRIDAWQASIDEKDR
QAEECEKRIETSIAFLKEHEEEKERLQEMKHRLERERLELHYASERLQQVIDGYEQELGTAAEETSISAKLEAVRQELQL
LKSKEQSLFDALKQAQQSLNDAKGRESGSLMSLRDAETSLEKAQNDWRVRSKDTGFTEPDQVKKSLLPQGRAEEMKKEID
EFLDTSKQLSANISRVTDKLADRRISEEEWTASVSLLKQAEAESGAAMEEKGAQAKAFAVMQKQHKRFKEIEAELKSWQT
QIDRLDKLQSVCKGNTFVEFLAEEQLESVARDASARLGALTRQRYAILVDSEGGFVMRDDANGGVKRPVSSLSGGETFLT
SLSLALALSAQIQLRGQYPLQFFFLDEGFGTLDQGLLDTVVTALEKLQSDNLSVGVISHVQELRARLPKKLIVHPSEPGG
KGTRVTLEIM

Nucleotide


Download         Length: 3393 bp        

>NTDB_id=568205 MK616_RS05485 WP_174532630.1 1072408..1075800(+) (sbcC) [Bacillus amyloliquefaciens strain WF2020]
ATGAAGCCGATTCTGTTAACGATAAAAGGGCTCCACAGCTTCAGGGAGGAACAGACCATTGATTTTGCCGGACTGTCAGG
AGCCGGGGTGTTCGGGATTTTCGGGCCGACGGGAAGCGGAAAATCGTCGATCCTTGATGCCATGACACTCGCTTTATACG
GAAAAGTGGAGCGCGCCGCAAATAATACACACGGAATCCTGAATCATGCCGAAGATCAGCTCGCCGTCTCATTTACATTC
GCGCTTCAATCCGGCCACCGGGTTTCCTACAAGGTCGAGCGCGTTTTTAAGAGAACGGATGAAACGAAAGTAAAAACCGC
CCTCTGCCGCCTGATTGAAATCAAAGACGAACAAACGGTGCTGGCCGATAAAGCGAATGAAGTGAACAAAAAGGTAGAGG
AGCTTCTTGGCCTGACCATTGACGACTTTACAAGAGCCGTCGTGCTGCCGCAAGGAAAGTTTGCCGAGTTTCTGTCGCTT
AAAGGCGCGGAAAGAAGACATATGCTCCAGCGCCTGTTTAATCTGGAACAGTACGGGGACAGGCTTGTCAAAAAATTGCG
GCGGCGGGCGCAGGAAGCGGCAGCGAAAAAAAATGAAATGCTGGCCGAACAATCCGGCCTCGGAGACGCAGGAGAAGATG
CGCTGAAGCAGGCTGAACAGCAGTTTCACGAAGCGAACGAACGGCTTGAAGAAGCTGAGAAGAAACGGGTCCGGGCAAAA
GAGCGTTTTGAGAATCACCAGGAAATTTGGAACCTGCAGACAGAAAGAGATGAATATGAGCGCCGGGAGAAAAAGCTTGA
GGAAAGACGCCCGTACATCACGGATTTGACTGAGCGTCTTAAAGAGGCGGAAACAGCTCTCGCCCTTGAGCCGTACGCAG
ACCGTTACACAGAAGCCGTCCGCCGGAAGCAGCGCGCCGAACAGGAACACGAACTGGCCAAACGGAAATCAGAGGCGGAA
ACCGTTACATTTACCCGGCAAAATGAAGCCTATGAAGCATGGCGGGCCCATAAGGCCGAACAGGAGCCGAAGCTTGTCAA
GGAAGATGAGCTGTATCAAAGACTTTCAGCCATTGAACAAAAACTGCTTGAAGCGAAAAAAGAAGCGGAAAAAACAAATG
CGGAACACAGCAAAAAAGAGAAAGAATACGAAGCAGCCTCGAAACAGCTGGCCGCAGTGAAAGACCGCCTGACCCGCGGC
CAAAACAGGCAGAATGAGCTGAAAGAAGAGCTGAAAACAGTTCAAGTGACCGCCGATGAACGGAAAAAATGCCAGACCGC
AGCACAGCTGGCGGCGGGCTTTCAGCAGACACAGGAACAAATCACGAAAGAGCGGGCCAATCTGACAACGCAGCTGAAAA
GCGTGGAGAAGCTGAACGGAGAAAGCGAGTCGCTCACAGCGAAAGCGAAAACGGAAGAGGAAGACATTACGCGCGCTTAT
CAAACGCTTCAAACCGTTTACCATATGGTCTGTGAAACGGAACGTTCACTGAAAGCCGCAGCCGAACGGGCTGACAAAAC
GCAAGCCGATCTCCGCAGGCGCTCAGAGGAAGCGAGAACGGCTGCATTAACAAAAGAATTATCGGAAAAACTAATCGAGG
GAAAGCCTTGTCCTGTATGCGGCTCGACGCAGCATGACCGCCCGCGTTCCGCTCATGAAACATTCTCGCCTGATACGGCT
GTGCAGGAACAGTTGCAGCAGGTTGAAGCACTGCTTTCTGAGGCGGCGGCTCTTTCTCAGGAAGTGCTGACAGCCAAGGT
TGCATTAGAAGAACAGTCGGGGCGTTTTACCGAAGAATGTCCGTTTCTGCAAAGCGCCCGGGTTCCGGAGCTGGAAGCCG
CTTCCTCCATCAGCGGACGCCCGCTTGATGAAGCGTTCAGCGCCGTCCGCTTGGAATGGAAACAAATGAAACAGGATATG
CTGTCGGTAAAAGAGAAGGTCACAAGACTGATCAGCGCGCATCAGCAGACGGTGAAACAAGCTGAGCAGCTGGCCGAACG
AATCCGCTACGAGGAAAAAGAAGCCGACCGTCTCAGACATTCATTAGAAGAGCTTGAATCGCTGTCAGAAAGCCGATTGA
ATCAGTACAACGAAGCCTGCGGTGATATTCCGCCAAACCGGATTGACGCCTGGCAGGCTTCGATAGATGAGAAGGACAGG
CAGGCAGAAGAATGTGAGAAGCGCATTGAAACAAGCATCGCATTCCTCAAGGAACATGAAGAGGAGAAAGAACGCCTGCA
GGAGATGAAGCATCGGCTTGAACGGGAACGGCTCGAGCTTCACTATGCGTCTGAGCGCCTGCAGCAGGTGATTGACGGAT
ATGAACAAGAGCTCGGAACAGCAGCTGAAGAAACATCAATTTCCGCAAAGCTTGAAGCGGTGCGGCAGGAATTACAGCTG
TTAAAATCGAAAGAGCAGTCCCTATTCGACGCGCTGAAGCAGGCGCAGCAATCACTGAATGACGCAAAAGGCCGGGAATC
CGGGAGTCTCATGTCACTCAGGGATGCTGAGACCTCCCTTGAGAAAGCGCAAAACGACTGGCGCGTGAGGTCAAAAGACA
CCGGGTTTACCGAGCCGGACCAAGTCAAAAAAAGTCTGCTTCCGCAAGGGCGTGCAGAGGAAATGAAAAAAGAAATTGAT
GAGTTCCTGGACACCTCAAAACAGCTATCGGCAAATATCAGCCGTGTTACTGATAAATTAGCCGACCGCCGGATATCAGA
GGAAGAATGGACAGCATCCGTTTCTCTGCTGAAGCAGGCAGAGGCTGAGTCAGGCGCCGCCATGGAGGAAAAAGGAGCAC
AGGCAAAAGCCTTCGCGGTTATGCAAAAACAGCATAAGCGCTTTAAAGAGATTGAAGCCGAACTGAAAAGCTGGCAGACA
CAGATTGACAGGCTTGATAAGCTCCAGTCTGTATGTAAAGGCAATACATTCGTCGAATTTTTAGCGGAAGAACAGCTGGA
AAGCGTGGCTCGGGACGCCTCTGCCCGTCTCGGAGCGCTGACAAGGCAGCGGTATGCCATATTAGTCGATTCAGAAGGCG
GTTTCGTCATGCGTGATGATGCGAACGGAGGCGTCAAACGGCCCGTATCAAGCCTTTCCGGCGGGGAGACGTTTCTGACA
TCGCTGTCGCTTGCGCTTGCCTTGTCCGCCCAGATTCAGCTGCGGGGGCAATACCCGCTGCAATTCTTTTTCTTAGATGA
AGGATTCGGGACTCTTGACCAAGGGCTCTTAGACACCGTTGTCACAGCGCTCGAAAAGCTGCAATCGGACAACTTATCCG
TCGGAGTGATCAGCCATGTGCAGGAGCTGAGAGCGCGTCTGCCGAAAAAATTAATCGTTCATCCGTCCGAACCGGGCGGG
AAAGGCACCCGGGTCACATTGGAGATCATGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(6-266)

SbcC/RAD50-like, Walker B motif (SbcC_Walker_B)

(1017-1085)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcC Bacillus subtilis subsp. subtilis str. 168

64.513

100

0.645