Detailed information NTG0568192

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: KIK00_RS12055
• Genome accession: NZ_CP075170
• Coordinates: 2671121..2672470 (+)
• Length: 449 a.a.
• NCBI ID: WP_047379126.1
• Uniprot ID: A0A5B2UDM5
• Organism: Chryseobacterium sp. MA9
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2666121..2677470

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KIK00_RS12040 (KIK00_12035)	yidC	2666490..2668289 (-)	1800	WP_255812652.1	membrane protein insertase YidC	-
KIK00_RS12045 (KIK00_12040)	-	2668468..2670075 (-)	1608	WP_255812653.1	CTP synthase	-
KIK00_RS12050 (KIK00_12045)	-	2670415..2670984 (-)	570	WP_255812654.1	YceI family protein	-
KIK00_RS12055 (KIK00_12050)	radA	2671121..2672470 (+)	1350	WP_047379126.1	DNA repair protein RadA	Machinery gene
KIK00_RS12060 (KIK00_12055)	-	2672616..2673209 (+)	594	WP_255812655.1	ACP phosphodiesterase	-
KIK00_RS12065 (KIK00_12060)	-	2673215..2673730 (-)	516	WP_255812656.1	DUF6702 family protein	-
KIK00_RS12070 (KIK00_12065)	-	2673812..2677030 (-)	3219	WP_255812657.1	S8/S53 family peptidase	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49885.46 Da
• Isoelectric Point: 6.6944

>NTDB_id=568192 KIK00_RS12055 WP_047379126.1 2671121..2672470(+) (radA) [Chryseobacterium sp. MA9]
MAKLKTAYFCQNCGTQYPQWLGQCKNCGEWNTLVEEVVEKPSHKTPPFSKTKQHVINIVEVVTSEEPRIKTPSDELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
EPDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASVLSSNEDIAISEHYCFAGEIGLSGEIRPV
AQVEQRITEAEKLGYEKIFVSNLNKIPKRKFGIKIEEVSKIEDFHERLF

Nucleotide

• Length: 1350 bp

>NTDB_id=568192 KIK00_RS12055 WP_047379126.1 2671121..2672470(+) (radA) [Chryseobacterium sp. MA9]
ATGGCAAAACTGAAAACAGCATATTTCTGTCAAAACTGCGGAACTCAATACCCACAATGGCTCGGACAATGTAAAAACTG
TGGAGAATGGAATACTCTGGTGGAAGAGGTGGTTGAAAAACCTTCTCATAAAACTCCTCCTTTCTCAAAAACCAAACAAC
ATGTGATCAATATTGTTGAAGTGGTAACGAGTGAAGAGCCGAGAATAAAAACTCCTTCTGATGAATTGAACCGCGTTTTA
GGAGGTGGAATTGTTTTAGGTTCCGTTACTTTGATTGGTGGTGAACCGGGAATCGGAAAGTCTACCCTTCTGCTTCAGCT
TGCTTTGAAAATGAAGAAAAAAATCTTCTATGTTTCGGGGGAAGAAAGTGCCTCTCAGATAAAAATGAGAGCAGACAGAC
TTACGGATATTCAAAATCCAAACTGCTTTCTTTTCACTGAAACATCATTGGAAAAAATCCTTCATGAGGCAAAAAAACTG
GAACCGGATTTCATGATTATTGACTCCATTCAGACCCTGCAGTCTCAGCTGATAGAAAGTTCTCCGGGAACAGTTTCCCA
AATCCGGGAATGTTCTAATGAGATCATCAAATATGCCAAAGAAAATAATACTCCTGTATTTCTTGTAGGGCACATCACCA
AAGATGGCCAGATTGCCGGACCAAAGGTACTGGAACATATGGTGGATGTTGTTTTGAATTTTGATGGAGACCGGAATCAC
CTTTTCAGATTGCTGAGAGCCAATAAAAACCGTTTTGGATCTACTTCTGAGATTGGTATCTATGAAATGGTTTCTCAGGG
ATTGAAAGAAATTAAAAATCCTTCTGAAATTCTGATCACAAAGAAATTTGAAGAACTTTCCGGAAACTCCGTTGCAGTAA
CCCTGGAAGGAAACCGACCTATGCTTCTGGAAATTCAGGCATTGGTAAGTACTGCCGTTTATGGGACTCCTCAAAGAAGT
TCCACCGGTTTTGATTCCAAAAGATTGAATATGCTTTTGGCTGTACTGGAAAAAAGAGCAGGTTTCCAACTCGGAGCTAA
AGACGTTTTCCTGAATATTACCGGAGGAATAAAAACAGACGACCCAGCACTGGATCTGGCAGTAGTAGCTTCTGTTCTTT
CATCCAATGAGGATATTGCCATCTCAGAACATTACTGTTTTGCCGGAGAAATCGGATTAAGTGGTGAAATACGTCCTGTA
GCACAGGTGGAACAAAGAATTACTGAGGCTGAAAAGCTGGGTTATGAAAAAATATTTGTTTCCAATCTTAATAAGATTCC
GAAAAGAAAATTCGGCATAAAGATCGAAGAAGTGAGTAAGATTGAGGATTTTCATGAGAGGCTTTTTTAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (65-217)

• Subunit ChlI of Mg-chelatase (ChlI) (338-423)

3D structure

• AlphaFold DB: A0A5B2UDM5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.894	100	0.492
radA	Streptococcus pneumoniae Rx1	48.026	100	0.488
radA	Streptococcus pneumoniae D39	48.026	100	0.488
radA	Streptococcus pneumoniae R6	48.026	100	0.488
radA	Streptococcus pneumoniae TIGR4	48.026	100	0.488
radA	Streptococcus mitis NCTC 12261	48.026	100	0.488
radA	Streptococcus mitis SK321	49.882	94.209	0.47