Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   MK616_RS01475 Genome accession   NZ_CP092778
Coordinates   267391..268512 (+) Length   373 a.a.
NCBI ID   WP_014416837.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF2020     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 262391..273512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK616_RS01455 (MK616_01455) - 262700..263695 (-) 996 WP_033575139.1 DUF5105 domain-containing protein -
  MK616_RS01460 (MK616_01460) - 263822..265222 (+) 1401 WP_154817995.1 YcdB/YcdC domain-containing protein -
  MK616_RS01465 (MK616_01465) - 265423..266781 (+) 1359 WP_240680137.1 YcdB/YcdC domain-containing protein -
  MK616_RS01470 (MK616_01470) - 266778..267281 (-) 504 WP_240680138.1 M15 family metallopeptidase -
  MK616_RS01475 (MK616_01475) rapF 267391..268512 (+) 1122 WP_014416837.1 tetratricopeptide repeat protein Regulator
  MK616_RS01480 (MK616_01480) - 268628..269404 (+) 777 WP_110124498.1 glucose 1-dehydrogenase -
  MK616_RS01485 (MK616_01485) - 269408..270646 (-) 1239 WP_129090930.1 MFS transporter -
  MK616_RS01490 (MK616_01490) - 270998..272677 (+) 1680 WP_129090929.1 glycoside hydrolase family 13 protein -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 44299.50 Da        Isoelectric Point: 5.0806

>NTDB_id=568176 MK616_RS01475 WP_014416837.1 267391..268512(+) (rapF) [Bacillus amyloliquefaciens strain WF2020]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQFELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYLTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=568176 MK616_RS01475 WP_014416837.1 267391..268512(+) (rapF) [Bacillus amyloliquefaciens strain WF2020]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCTGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATTTGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTTTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCAGGACAGGCGCTTGATATTTACAAGAAATATGAATTGTACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAAGCGGCG
GAGGATTTTGAACGGGCGGCCGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAATGGGAAG
ATGAGATCTATCTGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(187-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

42.857

99.464

0.426
  rapC Bacillus subtilis subsp. subtilis str. 168

40.323

99.732

0.402