Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AVAEIV_RS24215 Genome accession   NZ_CP092752
Coordinates   5147269..5148624 (-) Length   451 a.a.
NCBI ID   WP_012703276.1    Uniprot ID   C1DK09
Organism   Azotobacter vinelandii strain AEIV     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5142269..5153624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVAEIV_RS24190 (AVAEIV_004810) rpmB 5142414..5142650 (-) 237 WP_012703271.1 50S ribosomal protein L28 -
  AVAEIV_RS24195 (AVAEIV_004811) - 5142978..5144555 (+) 1578 WP_302227609.1 ABC transporter substrate-binding protein -
  AVAEIV_RS24200 (AVAEIV_004812) rpoH 5144638..5145492 (-) 855 WP_012703273.1 RNA polymerase sigma factor RpoH -
  AVAEIV_RS24205 (AVAEIV_004813) ftsX 5145597..5146604 (-) 1008 WP_012703274.1 permease-like cell division protein FtsX -
  AVAEIV_RS24210 (AVAEIV_004814) ftsE 5146604..5147272 (-) 669 WP_012703275.1 cell division ATP-binding protein FtsE -
  AVAEIV_RS24215 (AVAEIV_004815) pilA 5147269..5148624 (-) 1356 WP_012703276.1 signal recognition particle-docking protein FtsY Machinery gene
  AVAEIV_RS24220 (AVAEIV_004816) - 5148896..5149411 (-) 516 WP_012703277.1 dihydrofolate reductase -
  AVAEIV_RS24225 (AVAEIV_004817) - 5149542..5150654 (+) 1113 WP_302227610.1 glycerophosphodiester phosphodiesterase -
  AVAEIV_RS24230 (AVAEIV_004818) - 5150758..5152149 (+) 1392 WP_012703279.1 DUF2868 domain-containing protein -
  AVAEIV_RS24235 (AVAEIV_004819) - 5152142..5153509 (+) 1368 WP_302227611.1 GTPase/DUF3482 domain-containing protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48132.71 Da        Isoelectric Point: 4.6253

>NTDB_id=568159 AVAEIV_RS24215 WP_012703276.1 5147269..5148624(-) (pilA) [Azotobacter vinelandii strain AEIV]
MFGSNDDKKPAEAGEKKGLFGWFRKKEQATPAPAPEAEVPALGSEPPRAVETPEAVEPQPPVTEAPPATVEAFPLDAVVE
STDVPSAPPPAAEAAIAEAEEEAVFSSRWRGAAHGAPTPEPERPVEAETSVPLAQPAPRPNKSGFFARLRQGLAKTGSTL
GEGMASLFLGEKAIDDELLEELETRLLLADVGVEATTAIIQSLTQRVARKELADSEALYRALQEELAALLRPVEQPLVLE
SEQRPYVILVVGVNGVGKTTTIGKLAARLQQEGRKVMLAAGDTFRAAAVEQLQIWGERNRIPVIAQHTGADSASVIFDAL
QAAKARGMDVLIADTAGRLHTKDNLMEELKKVRRVLGKLDEAAPHEVLLVLDAGTGQNAINQTKQFNQAVEITGLALTKL
DGTAKGGVIFALARQFGLPIRYIGVGEGVDDLRDFAAEEFVRALFAEKPAQ

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=568159 AVAEIV_RS24215 WP_012703276.1 5147269..5148624(-) (pilA) [Azotobacter vinelandii strain AEIV]
ATGTTTGGTTCAAACGACGACAAGAAGCCGGCCGAGGCCGGAGAGAAGAAAGGCCTGTTCGGCTGGTTCCGCAAGAAGGA
GCAGGCCACACCGGCGCCCGCTCCCGAGGCAGAGGTCCCCGCGCTCGGCAGCGAACCGCCGCGGGCCGTCGAGACCCCGG
AGGCGGTCGAGCCGCAGCCGCCTGTCACCGAAGCACCGCCGGCGACCGTCGAGGCGTTCCCCTTGGACGCCGTGGTGGAG
TCGACCGATGTGCCGTCCGCGCCGCCGCCAGCGGCTGAAGCGGCCATCGCCGAGGCCGAGGAGGAGGCGGTCTTCTCTAG
CCGCTGGCGCGGCGCCGCCCACGGCGCGCCGACGCCCGAGCCGGAGCGGCCCGTCGAGGCCGAGACGTCGGTTCCGCTTG
CCCAGCCCGCGCCGCGGCCGAACAAGTCCGGCTTCTTCGCCCGTCTCCGCCAGGGGCTGGCCAAGACCGGCTCGACCCTC
GGCGAGGGCATGGCCAGTCTGTTCCTCGGCGAGAAGGCGATCGACGACGAACTGCTGGAAGAGCTGGAGACCCGCCTGTT
GCTCGCCGACGTCGGCGTCGAGGCGACCACCGCGATCATCCAGAGCCTGACCCAACGGGTGGCGCGCAAGGAGCTGGCCG
ACAGCGAAGCGCTGTACCGTGCCCTGCAGGAGGAACTGGCCGCGCTGCTCAGGCCGGTCGAGCAGCCGCTGGTACTCGAA
TCCGAACAGCGGCCCTATGTGATCCTGGTGGTCGGCGTCAACGGCGTCGGCAAGACCACCACCATCGGCAAGCTGGCCGC
GCGCCTGCAGCAGGAGGGCAGAAAGGTCATGCTCGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTCGAGCAGTTGCAGA
TATGGGGCGAACGCAACCGGATTCCAGTGATCGCCCAGCACACCGGCGCGGATTCCGCTTCGGTGATCTTCGACGCCCTG
CAGGCCGCCAAGGCGCGCGGCATGGATGTGCTGATCGCCGACACCGCCGGCCGCCTGCACACCAAGGACAATCTCATGGA
GGAGTTGAAGAAGGTCCGCCGGGTGCTCGGCAAGCTGGACGAGGCGGCACCCCACGAAGTGCTGCTGGTGCTGGATGCCG
GTACCGGGCAGAACGCCATCAACCAGACGAAGCAGTTCAACCAGGCGGTGGAGATCACCGGCCTCGCGCTGACCAAGCTG
GACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAGGCAGTTCGGCCTGCCGATCCGCTACATCGGGGTCGGCGA
GGGCGTCGACGATCTGCGCGACTTCGCTGCCGAGGAGTTCGTCCGCGCGCTGTTCGCGGAGAAGCCGGCGCAATGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(160-226)

SRP54-type protein, GTPase domain (SRP54)

(246-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DK09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.045

97.561

0.459