Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   AVAEIV_RS22580 Genome accession   NZ_CP092752
Coordinates   4835097..4837316 (+) Length   739 a.a.
NCBI ID   WP_012703016.1    Uniprot ID   C1DHR6
Organism   Azotobacter vinelandii strain AEIV     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4830097..4842316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVAEIV_RS22565 (AVAEIV_004487) - 4831503..4832828 (+) 1326 WP_302229433.1 IS4-like element ISAzvi6 family transposase -
  AVAEIV_RS22570 (AVAEIV_004488) - 4832876..4834144 (-) 1269 WP_012703014.1 malic enzyme-like NAD(P)-binding protein -
  AVAEIV_RS22575 (AVAEIV_004489) rpmE 4834710..4834922 (-) 213 WP_012703015.1 50S ribosomal protein L31 -
  AVAEIV_RS22580 (AVAEIV_004490) priA 4835097..4837316 (+) 2220 WP_012703016.1 primosomal protein N' Machinery gene
  AVAEIV_RS22585 (AVAEIV_004491) argS 4837448..4839187 (+) 1740 WP_302227460.1 arginine--tRNA ligase -
  AVAEIV_RS22590 (AVAEIV_004492) - 4839209..4840003 (+) 795 WP_012703018.1 SPOR domain-containing protein -
  AVAEIV_RS22595 (AVAEIV_004493) hslV 4840119..4840646 (+) 528 WP_041807419.1 ATP-dependent protease subunit HslV -
  AVAEIV_RS22600 (AVAEIV_004494) hslU 4840748..4842088 (+) 1341 WP_012703020.1 ATP-dependent protease ATPase subunit HslU -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 81995.70 Da        Isoelectric Point: 9.9132

>NTDB_id=568153 AVAEIV_RS22580 WP_012703016.1 4835097..4837316(+) (priA) [Azotobacter vinelandii strain AEIV]
MPAPILRLALPSPLRRLFDYRAPPGVPTARLRPGVRLRVPFGRREVVGVLVELSEHSEVPPDKLKAALELLDPCSPLPPS
LLRLCRWTAHYYQHSLGDTFGWALPALLRQGEPAERRQERWWHLAADARPDDPRLARAPRQREALQTLAQHPHGVPQALL
GKLRLNKASLDLLLAKGLLRTEIRHHAPRERHGSWLLQAELPLNDEQREAVEAVRAGFGGFNAFLLAGVTGSGKTEVYLQ
LIHQVLEAGRQALVLIPEINLGPQTLERFTRRFNARVALLHSGIGDRERLDAWLAARDGEADIVIGTRSALFTPLKHPGL
IIVDEEHDASYKQQEGLRYHARDLAVVRARQEEIPVLLGSATPSLESLHNAHAGRYALLRLRQRAGQARPPRFLRLDVKS
RPLDAGISPPLQQAIARTLAAGQQVLVFLNRRGFAPTLLCHDCGWIALCPRCDARMTLHQRQRELRCHHCGHAERQPTAC
PQCAQVDLRPVGAGTERAEERLAILFPDYPVLRIDRDSTARKEALPRLLATIHRGEPCLLVGTQMIAKGHHFPRVTLVAI
LDADGGLFSADFRASERMAQLIVQVAGRAGRAEEPGTVIIQTHLADHPLLVQLAEQGYLAFAEQALAERRAAGLPPFAHL
ALLRAEAHRPGQAEGFLEQAADEARQLLAALQLSSLELLGPVPAPMERRAGRHRAQLLLQASGRAPLHRLLGPWLAALER
LPGARTVRWSLDVDPIDLY

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=568153 AVAEIV_RS22580 WP_012703016.1 4835097..4837316(+) (priA) [Azotobacter vinelandii strain AEIV]
GTGCCCGCCCCGATCCTCCGCCTCGCCCTGCCCTCGCCGCTGCGTCGCCTGTTCGACTACCGCGCCCCGCCCGGCGTGCC
GACCGCTCGCCTGCGGCCGGGGGTACGCCTGCGCGTGCCGTTCGGCCGGCGCGAAGTGGTCGGCGTACTGGTCGAACTGA
GCGAGCACAGCGAAGTGCCGCCCGACAAGCTGAAGGCCGCCCTCGAACTGCTCGATCCCTGTTCGCCACTGCCGCCGAGC
CTGCTCAGGCTGTGCCGGTGGACGGCCCACTACTACCAGCACAGCCTCGGCGACACCTTCGGCTGGGCTTTGCCGGCGCT
GCTGCGCCAGGGCGAACCGGCCGAGCGGCGCCAGGAACGCTGGTGGCACCTGGCCGCAGACGCACGTCCGGACGATCCGC
GCCTGGCCCGCGCACCGCGCCAGCGCGAGGCACTGCAGACCCTCGCCCAACATCCCCATGGCGTGCCCCAGGCCCTGCTC
GGCAAGCTGCGACTAAACAAGGCCAGTCTCGACCTGCTGCTGGCCAAGGGGCTGCTGCGCACCGAAATACGCCACCACGC
CCCGCGCGAACGGCACGGTAGCTGGCTGCTCCAGGCCGAACTGCCGCTGAACGACGAACAGCGCGAGGCCGTCGAGGCAG
TGCGCGCCGGCTTCGGCGGCTTCAACGCCTTTCTGCTCGCCGGCGTCACCGGCAGCGGCAAGACCGAGGTCTACCTGCAA
CTGATCCACCAGGTACTAGAGGCCGGCCGGCAGGCGCTGGTGCTGATCCCGGAAATCAACCTCGGCCCACAGACACTGGA
ACGATTCACCCGCCGCTTCAATGCCCGGGTTGCCCTGCTCCACTCCGGCATCGGCGACCGCGAACGCCTGGACGCCTGGC
TGGCGGCCCGCGACGGCGAGGCAGACATCGTCATCGGCACCCGCTCGGCACTCTTCACCCCGCTCAAGCATCCCGGCCTG
ATCATCGTCGACGAGGAGCACGATGCCTCCTACAAACAGCAGGAAGGCCTGCGTTACCACGCTCGCGACCTGGCCGTGGT
ACGCGCCCGGCAGGAGGAGATCCCGGTCCTGCTCGGCTCCGCCACACCCTCCCTGGAGAGCCTGCACAACGCCCATGCCG
GACGCTACGCCCTGCTCCGGCTCCGCCAGCGCGCCGGCCAGGCCCGTCCGCCGCGCTTCCTGCGCCTGGACGTGAAAAGC
CGACCGCTCGACGCCGGGATCTCTCCGCCCTTGCAACAGGCCATCGCCCGCACGCTCGCCGCCGGCCAGCAGGTACTGGT
GTTCCTCAACCGCCGTGGTTTCGCGCCGACCCTGCTGTGCCACGACTGCGGCTGGATCGCCCTGTGCCCGCGTTGCGATG
CGCGCATGACCCTGCACCAGCGCCAGCGCGAACTGCGCTGCCACCATTGCGGCCACGCCGAACGCCAGCCGACCGCCTGC
CCGCAATGCGCCCAGGTCGACCTGCGGCCGGTCGGCGCCGGCACCGAACGCGCGGAAGAACGTCTGGCCATCCTCTTCCC
GGATTATCCGGTGCTGCGCATCGACCGCGACAGCACCGCACGCAAGGAGGCGCTGCCCAGGCTGCTCGCCACCATCCACC
GCGGCGAGCCCTGCCTGCTGGTCGGCACCCAGATGATCGCCAAGGGCCATCATTTTCCGCGCGTCACCCTGGTGGCGATC
CTCGATGCCGACGGCGGCCTGTTCTCCGCCGACTTTCGCGCCAGCGAACGCATGGCCCAACTGATCGTGCAGGTCGCAGG
GCGCGCCGGGCGCGCCGAAGAGCCGGGCACGGTGATCATCCAGACCCACCTGGCCGACCACCCGCTGCTGGTCCAGCTCG
CCGAACAGGGCTACCTCGCCTTCGCCGAGCAGGCCCTCGCGGAGCGCCGCGCCGCCGGCCTGCCGCCCTTCGCCCACCTG
GCCCTGCTGCGTGCCGAAGCGCACCGGCCGGGTCAGGCCGAGGGCTTTCTCGAACAGGCCGCCGACGAGGCCCGGCAACT
GCTCGCCGCCCTGCAACTCTCTAGCCTCGAACTGCTCGGTCCGGTGCCGGCGCCGATGGAGCGACGCGCCGGCCGCCATC
GCGCCCAGTTACTGCTGCAGGCCTCCGGCCGCGCACCACTTCACCGCCTGCTCGGGCCCTGGCTGGCGGCCCTCGAACGA
CTGCCGGGCGCCCGCACGGTGCGCTGGTCGCTGGACGTCGACCCGATCGACCTGTACTGA

Domains

Predicted by InterProScan.

Primosomal protein N C-terminal domain (PriA_C)

(636-735)

DEAD/DEAH box helicase (DEAD)

(205-367)

3DNA-binding domain (3BD) (PriA_3primeBD)

(9-105)

PriA DNA helicase Cys-rich region (CRR) domain (Zn_ribbon_PriA)

(449-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DHR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

47.218

99.729

0.471
  priA Bacillus subtilis subsp. subtilis str. 168

35.309

100

0.379