Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   AVAEIV_RS14115 Genome accession   NZ_CP092752
Coordinates   3069189..3071219 (-) Length   676 a.a.
NCBI ID   WP_050764380.1    Uniprot ID   -
Organism   Azotobacter vinelandii strain AEIV     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3064189..3076219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVAEIV_RS14100 (AVAEIV_002808) - 3065735..3066766 (-) 1032 WP_302225465.1 LacI family DNA-binding transcriptional regulator -
  AVAEIV_RS14105 (AVAEIV_002809) - 3067091..3067618 (+) 528 WP_012701295.1 gluconokinase -
  AVAEIV_RS14110 (AVAEIV_002810) xylB 3067699..3069186 (-) 1488 WP_302225469.1 xylulokinase -
  AVAEIV_RS14115 (AVAEIV_002811) recP/tkt 3069189..3071219 (-) 2031 WP_050764380.1 transketolase Machinery gene
  AVAEIV_RS14120 (AVAEIV_002812) tal 3071216..3072184 (-) 969 WP_012700804.1 transaldolase -
  AVAEIV_RS14125 (AVAEIV_002813) - 3072168..3072863 (-) 696 WP_236616144.1 HAD family hydrolase -
  AVAEIV_RS14130 (AVAEIV_002814) - 3072875..3074350 (-) 1476 WP_302225477.1 mannitol dehydrogenase family protein -
  AVAEIV_RS14135 (AVAEIV_002815) - 3074474..3075583 (-) 1110 WP_012701299.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 72585.14 Da        Isoelectric Point: 5.9223

>NTDB_id=568129 AVAEIV_RS14115 WP_050764380.1 3069189..3071219(-) (recP/tkt) [Azotobacter vinelandii strain AEIV]
MTQNLKPGRRALANAIRVLSMDAVERANSGHPGAPMGMADIAEVLWNGHLRHNPGNPRWPDRDRFVLSNGHGSMLLYSLL
HLSGYDLPVEELKRFRQLHSRTPGHPEYGYTPGVETTTGPLGQGLANAVGMALAERLLAADFNRPGQAIVDHRTYAFVGD
GCLMEGISHEVCSLAGTLGLGKLIVFYDDNGISIDGEVAGWFSDDTPARFRAYGWQVVEAVDGHDASALEAALAAAKADT
ERPTLICCKTTIGFGAPTKAGSHDCHGAPLGGEEIAAAREALDWPHAPFEVPAQIARAWDARERGAALERDWRQRFDDYA
RAYPALAAELERRLAGELPADWGARRDALIAGCQQAARELATRKSSQQVLEALGPLLPELLGGSADLAPSNLTRWSGSRS
VGGEAPGGNYIHYGVREFGMSAMMNGLALHGGFIPYGGTFLMFMEYARNAVRMAALMKLRAVFVYTHDSIGLGEDGPTHQ
PVEQLASLRQTPNLETWRPCDETETAVAWCAALERRDGPSALVLSRQNLPAAARDAGQRAAIERGAYVLLDCPGTPELIL
LASGSEVALALAAAQALGEAGRAVRVVSVPCLERFERQAADYREAVLPSAVRARVAVEMARPESWHRYVGLDGAVLGMEG
FGESAPAAELFRHFGFSVENLLARAQAVLAGLEGRA

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=568129 AVAEIV_RS14115 WP_050764380.1 3069189..3071219(-) (recP/tkt) [Azotobacter vinelandii strain AEIV]
ATGACCCAGAACCTGAAACCGGGCCGACGCGCCCTGGCCAATGCCATCCGCGTCCTGAGCATGGATGCGGTGGAACGGGC
GAACTCCGGCCATCCCGGCGCCCCCATGGGCATGGCCGATATCGCCGAAGTGCTCTGGAACGGCCACCTGCGCCACAACC
CGGGCAACCCCCGCTGGCCCGACCGCGACCGCTTCGTGCTCTCCAACGGGCACGGCTCGATGCTGCTCTACAGCCTGCTG
CACCTCTCCGGCTACGACTTGCCGGTCGAGGAGCTCAAGCGCTTCCGCCAGTTGCATTCGCGCACTCCCGGGCACCCGGA
GTACGGCTACACGCCGGGGGTGGAGACCACCACCGGTCCGCTCGGCCAGGGGCTGGCCAACGCCGTCGGCATGGCCCTGG
CCGAGCGGCTGCTGGCGGCGGACTTCAACCGCCCGGGACAGGCGATCGTCGACCACCGCACCTACGCCTTCGTCGGCGAC
GGCTGCCTGATGGAGGGCATCTCCCACGAGGTCTGCTCGCTGGCCGGCACCCTGGGACTCGGCAAGCTGATCGTGTTCTA
CGACGACAACGGCATCTCCATCGACGGTGAGGTCGCGGGCTGGTTCAGCGACGACACGCCGGCGCGCTTCCGCGCCTACG
GCTGGCAGGTCGTCGAGGCGGTCGACGGCCACGACGCCAGCGCGCTCGAGGCGGCGCTGGCGGCGGCCAAGGCCGATACG
GAGCGGCCGACGCTGATCTGCTGCAAGACCACCATCGGCTTCGGCGCGCCGACCAAGGCCGGCAGCCACGACTGCCACGG
CGCCCCGCTGGGCGGCGAGGAGATCGCCGCGGCCCGCGAGGCGCTGGACTGGCCGCACGCGCCCTTCGAGGTGCCCGCGC
AGATCGCCAGGGCCTGGGACGCGCGCGAGCGCGGGGCGGCGCTGGAGCGGGACTGGCGACAACGCTTCGACGACTACGCG
CGGGCCTACCCGGCGCTGGCCGCCGAACTGGAGCGGCGCCTGGCCGGCGAGCTGCCGGCCGACTGGGGCGCGCGGCGCGA
CGCGCTGATCGCCGGCTGCCAGCAGGCGGCGCGCGAGCTGGCGACCCGCAAGAGCTCGCAGCAGGTCCTGGAAGCGCTGG
GCCCGCTGCTGCCGGAACTGCTCGGCGGCTCGGCGGACCTGGCGCCCTCGAACCTGACCCGCTGGTCCGGCTCCCGCTCG
GTCGGCGGCGAGGCGCCCGGGGGCAACTACATCCACTACGGGGTGCGCGAGTTCGGCATGAGCGCGATGATGAACGGGCT
GGCGCTGCACGGCGGTTTCATTCCCTACGGCGGCACCTTCCTGATGTTCATGGAATACGCCCGCAACGCCGTGCGCATGG
CCGCGCTGATGAAGCTGCGCGCGGTGTTCGTCTACACCCACGACTCGATCGGCCTGGGTGAGGACGGCCCGACCCACCAG
CCGGTCGAACAGCTCGCCAGCCTGCGCCAGACGCCGAACCTGGAAACCTGGCGGCCCTGCGACGAGACGGAGACCGCGGT
GGCCTGGTGCGCGGCGCTCGAACGGCGGGACGGCCCGTCGGCGCTGGTGCTGTCGCGGCAGAACCTGCCGGCCGCGGCGC
GCGACGCCGGGCAGCGCGCGGCCATCGAGCGCGGCGCCTATGTGCTGCTCGACTGCCCGGGCACGCCGGAGCTGATCCTG
CTGGCGTCCGGCTCCGAGGTGGCGCTGGCGCTGGCGGCGGCGCAGGCGCTGGGCGAGGCGGGCCGGGCGGTCCGCGTGGT
GTCGGTGCCGTGCCTGGAGCGTTTCGAGCGGCAGGCGGCGGACTACCGCGAGGCGGTGCTGCCGTCCGCGGTGCGGGCCC
GCGTCGCGGTCGAGATGGCGCGTCCGGAGAGCTGGCACCGCTACGTGGGGCTCGACGGCGCGGTGCTCGGCATGGAGGGG
TTCGGCGAGTCGGCGCCGGCGGCGGAGCTGTTCCGGCATTTCGGCTTCAGCGTCGAGAACCTGCTCGCCAGGGCGCAGGC
CGTGCTGGCCGGGCTGGAGGGGAGGGCGTAG

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(359-530)

Transketolase, C-terminal domain (Transketolase_C)

(549-660)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(10-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

47.496

97.485

0.463