Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AVAEIV_RS05145 Genome accession   NZ_CP092752
Coordinates   1057259..1058605 (+) Length   448 a.a.
NCBI ID   WP_012699764.1    Uniprot ID   C1DPB1
Organism   Azotobacter vinelandii strain AEIV     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1052259..1063605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVAEIV_RS05120 (AVAEIV_001023) - 1053181..1053630 (-) 450 WP_302228326.1 DUF421 domain-containing protein -
  AVAEIV_RS05125 (AVAEIV_001024) - 1053641..1054195 (-) 555 WP_302228328.1 hypothetical protein -
  AVAEIV_RS05130 (AVAEIV_001025) - 1054447..1055307 (+) 861 WP_302228329.1 SDR family oxidoreductase -
  AVAEIV_RS05135 (AVAEIV_001026) - 1055511..1056020 (-) 510 WP_012699762.1 ferritin-like domain-containing protein -
  AVAEIV_RS05140 (AVAEIV_001027) - 1056278..1056790 (+) 513 WP_061290518.1 DUF4142 domain-containing protein -
  AVAEIV_RS05145 (AVAEIV_001028) luxO 1057259..1058605 (+) 1347 WP_012699764.1 sigma-54-dependent transcriptional regulator Regulator
  AVAEIV_RS05150 (AVAEIV_001029) - 1058727..1058912 (-) 186 WP_012699765.1 general stress protein -
  AVAEIV_RS05155 (AVAEIV_001030) - 1059160..1059573 (+) 414 WP_302228330.1 CopD family protein -
  AVAEIV_RS05160 (AVAEIV_001031) - 1059608..1060105 (-) 498 WP_061290514.1 DUF2231 domain-containing protein -
  AVAEIV_RS05165 (AVAEIV_001032) coxB 1060127..1061074 (+) 948 WP_302229276.1 cytochrome c oxidase subunit II -
  AVAEIV_RS05170 (AVAEIV_001033) ctaD 1061071..1063578 (+) 2508 WP_302228331.1 cytochrome c oxidase subunit I -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49302.51 Da        Isoelectric Point: 6.6964

>NTDB_id=568095 AVAEIV_RS05145 WP_012699764.1 1057259..1058605(+) (luxO) [Azotobacter vinelandii strain AEIV]
MKPTTEVTGRILLVDDDPVILRTFRSCLEERGYSAMSAGSGPQAEALLQHHVFDLCFLDLRLGRENGLSILQRLRSQAPW
MRVVIVTAMSAVNTAVEAIKSGASDYLVKPCSPDQLCRVTAKQLETGPLASRLEALEGELRQAGDAFGSDNPTMMAVLET
ARQVADTDANILVLGESGTGKGELARAIHGWSRRAKKPFVTISCPSLSAELMESEMFGHSRGAFTGATESTLGRVNQADG
GTLFLDEIGDFPLSLQPKLLRFIQDKEYERIGDPVTRQADVRILAATNLDLEAMVQAGRFREDLLYRINVITLHLPPLRE
RSEDILVLAERFLRMFVRNYGRPARRFGEAAQAALLGYHWPGNIRELRNVVERTSIICPQEVIGTSHLGLGEQPGGSVPR
VGMPLRLEELEKAHITAVLASSETLEQAARTLGIDASTLYRKRKQYGL

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=568095 AVAEIV_RS05145 WP_012699764.1 1057259..1058605(+) (luxO) [Azotobacter vinelandii strain AEIV]
ATGAAACCAACGACGGAAGTCACCGGCCGCATTCTCTTGGTGGATGACGATCCGGTAATACTGCGCACGTTCCGTTCCTG
TCTCGAAGAGCGTGGCTACAGCGCGATGAGTGCCGGCAGCGGGCCGCAGGCGGAGGCGCTGTTGCAACACCATGTCTTCG
ATCTGTGTTTCCTCGATCTGCGTCTGGGCAGGGAAAACGGCCTATCGATACTGCAGCGCCTGCGCAGCCAGGCGCCCTGG
ATGCGGGTGGTGATAGTCACCGCCATGAGCGCCGTGAACACGGCGGTCGAGGCCATAAAGTCCGGCGCCTCGGACTATCT
GGTCAAGCCCTGCAGCCCCGACCAGCTATGCCGGGTCACGGCCAAGCAACTGGAGACCGGCCCGCTGGCATCGCGCCTGG
AGGCGCTGGAGGGCGAGTTGCGCCAGGCCGGCGATGCCTTCGGCTCGGACAATCCGACGATGATGGCGGTGCTGGAGACC
GCCCGGCAGGTGGCGGACACCGACGCCAATATCCTCGTTCTCGGCGAATCGGGAACCGGCAAGGGCGAGCTGGCGCGCGC
CATCCATGGCTGGAGCCGGCGGGCGAAAAAGCCCTTCGTGACCATCAGTTGTCCTTCGCTGTCCGCCGAGCTGATGGAGA
GCGAGATGTTCGGGCACAGCCGCGGCGCCTTCACCGGGGCCACGGAGAGCACCCTGGGGCGGGTCAACCAGGCCGACGGC
GGTACGCTGTTTCTCGACGAGATCGGTGACTTTCCCCTGTCCCTGCAGCCCAAGCTGCTGCGCTTCATCCAGGACAAGGA
GTACGAGCGGATCGGCGATCCGGTGACCCGCCAGGCCGACGTGCGCATCCTCGCCGCCACCAACCTCGATCTGGAGGCCA
TGGTGCAGGCCGGGCGCTTTCGCGAGGACCTGCTGTACCGGATCAACGTGATCACCCTGCATCTGCCGCCGCTGCGCGAG
CGTTCCGAGGACATCCTCGTCCTGGCCGAGCGTTTCCTGCGGATGTTCGTCAGGAACTACGGGCGTCCGGCGCGCCGCTT
CGGCGAGGCGGCGCAGGCGGCCCTGCTGGGCTACCACTGGCCGGGTAACATCCGCGAGCTGCGCAACGTGGTGGAGCGGA
CCAGCATCATCTGTCCGCAGGAGGTAATCGGGACGAGTCACCTGGGACTGGGCGAGCAGCCGGGTGGCAGCGTGCCGCGG
GTGGGCATGCCGCTGCGTCTCGAGGAACTGGAGAAGGCCCATATCACCGCGGTGCTGGCGAGCAGCGAGACCCTCGAACA
GGCCGCCAGGACGCTCGGCATCGATGCTTCGACGCTGTATCGCAAACGCAAACAGTATGGCCTGTGA

Domains

Predicted by InterProScan.

Sigma-54 interaction domain (Sigma54_activat)

(150-313)

Response regulator receiver domain (Response_reg)

(11-118)

Bacterial regulatory protein, Fis family (HTH_8)

(407-446)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DPB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

36.667

100

0.368